Click here to switch to the map view.

The map label for this gene is rbsA1 [H]

Identifier: 189025534

GI number: 189025534

Start: 313551

End: 315101

Strand: Direct

Name: rbsA1 [H]

Synonym: TPASS_0300

Alternate gene names: 189025534

Gene position: 313551-315101 (Clockwise)

Preceding gene: 189025533

Following gene: 189025535

Centisome position: 27.52

GC content: 53.38

Gene sequence:

>1551_bases
GTGCTCAGCGATGTGAATCTTTCCTTTTTTACCGGTGAAATTCACGCGTTGTTGGGAAAAAATGGTGCAGGAAAATCCAC
GCTTGCGCATATTCTTTCGGGCTTTTGCGTGCCGACGCATGGGCAGCTCCGTCTGGATGGAAAGGAGCAGCGCTTCTCCG
TACCCTTCGATGCGCTCCGTGCAGGAATTGGCATAGTGCACCAGCAACCGGTATTTGCAGAACGCGCAACAGTATTTGAA
AATGTAGTGATGGGTAGTGCTGCACTCACCGGCGTGCGGTGGGTGCGCCGTGCACAGGTGAGAGAACGCATAGATCGCAT
TATCGCCCAGTGGCGTATGCCCTTGAAGAAGGAAGAATACGTTGCATGTTTGAGTGCAGACAAGCGGTTTTTTGTATCGT
TGCTCTGTGTATTGTTTCGCAATCCGCGTTTCATCATCCTGGATGAGCCGCGGTGTGCTCCGGCGCAATCGCGTGCGGTT
TTCTTTTCTCATCTTGAAGAGTTTTTTGTGCGTTCTTCGCACGCGCCCCGGTGTGGTGGCGGAGTGATAGTAGTGACGCA
CCGATTTGCTGATGCATTGCGATGGGCACAGCGTATTTCTTTGATAGAAGGGGGAAAAGCGTGCAGTTTTCTGCGTACGG
ATCTTTTAGACGAATACTGTTCTGCGCATCAGGTGAATGAATGTATTCAGAAAGTGTCCTGTGCGCTCATGTCCGCATCA
ACGGTGACTTCTTCTGCCGTAAGTTCTTTTTCCTCTCTGTCAGATACCCAGTCGTGCGCAACTGTGCCGCGCACATCTTC
TGCTCGTCCTTGGGTGTTGCGCGTTGAGTCGCTGCAGGTGAGTAAACACGCAGACGTTCCGCTCACAGATATTTCGTTTT
CTGTGGCCGCATCTGCTATCATAGGGATAGTCGGTACGCCAGAAGATGGTGTGCACGTATTGGAAGATATACTGTGTGGT
ATGCACGCTGGGGCGTCGCGTACGCACTGCACCGGGAATATTCTTTTGCAGGAGCACGATCAGGTGTGGTGTCTCCCCCT
CCAGCGCAATACGCCCTCGCTGCTGCGGGCACACGGGGTTGCGTGTGTGCCGTCTAATTGCATACAGCGCGGTGCCTCAA
TGCAGTTAACTCTTTTTGATTTGCTCGTTCCCTACACGTTGCGTACGTGGCGCACGCGTGTGCGCGCCCAGATGCGCTTT
GTTGCTCGTCTTCTTGCAGAAGAAGAAATTTACTGCGATCCGTTGCAGCCTGCCTGTACGCTTTCAGGCGGACAGTTGCA
GCGCGTTATTTTAGCGCGTGAGCTTGCAACGCGTCCACGTCTTCTCATTTTGGCAGAACCTGCAGAAGGATTGGATAGCG
CCAGTGAACAGCGCTTGCTTGCACGTCTGCGCCAGGTAGCACAGGCAGGAACTGCTCTTGTGCTCCTTGCGCGAGAACAG
CATCAGGCACAGTGGCGTGCGTTGTGCACAGAACGTTTCTTGCTACGTGCAGGTACGTTGTGTGCTGAAGTGTCAGGCAC
TCCGTCTCCGTCTCAGGATTCTCATACGTGA

Upstream 100 bases:

>100_bases
GGGGTATGTTCGGTCACCCTGGCAGGCGCGCAGTCGACGATGCGCACACAGCGCATGGCCCGTGTTCGGGCGCGCGTGAG
ACGGACGCGCTGAGCACAGC

Downstream 100 bases:

>100_bases
AACGGGTGATCAATTCGTGTATCGCAGTGTTGCTCGGTGTTGCAGTTATGAGTGCTGTGATTGTTCTGTGCTCGGAAAAT
CCATCCGTATCTTTGGCAGC

Product: ribose/galactose ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MLSDVNLSFFTGEIHALLGKNGAGKSTLAHILSGFCVPTHGQLRLDGKEQRFSVPFDALRAGIGIVHQQPVFAERATVFE
NVVMGSAALTGVRWVRRAQVRERIDRIIAQWRMPLKKEEYVACLSADKRFFVSLLCVLFRNPRFIILDEPRCAPAQSRAV
FFSHLEEFFVRSSHAPRCGGGVIVVTHRFADALRWAQRISLIEGGKACSFLRTDLLDEYCSAHQVNECIQKVSCALMSAS
TVTSSAVSSFSSLSDTQSCATVPRTSSARPWVLRVESLQVSKHADVPLTDISFSVAASAIIGIVGTPEDGVHVLEDILCG
MHAGASRTHCTGNILLQEHDQVWCLPLQRNTPSLLRAHGVACVPSNCIQRGASMQLTLFDLLVPYTLRTWRTRVRAQMRF
VARLLAEEEIYCDPLQPACTLSGGQLQRVILARELATRPRLLILAEPAEGLDSASEQRLLARLRQVAQAGTALVLLAREQ
HQAQWRALCTERFLLRAGTLCAEVSGTPSPSQDSHT

Sequences:

>Translated_516_residues
MLSDVNLSFFTGEIHALLGKNGAGKSTLAHILSGFCVPTHGQLRLDGKEQRFSVPFDALRAGIGIVHQQPVFAERATVFE
NVVMGSAALTGVRWVRRAQVRERIDRIIAQWRMPLKKEEYVACLSADKRFFVSLLCVLFRNPRFIILDEPRCAPAQSRAV
FFSHLEEFFVRSSHAPRCGGGVIVVTHRFADALRWAQRISLIEGGKACSFLRTDLLDEYCSAHQVNECIQKVSCALMSAS
TVTSSAVSSFSSLSDTQSCATVPRTSSARPWVLRVESLQVSKHADVPLTDISFSVAASAIIGIVGTPEDGVHVLEDILCG
MHAGASRTHCTGNILLQEHDQVWCLPLQRNTPSLLRAHGVACVPSNCIQRGASMQLTLFDLLVPYTLRTWRTRVRAQMRF
VARLLAEEEIYCDPLQPACTLSGGQLQRVILARELATRPRLLILAEPAEGLDSASEQRLLARLRQVAQAGTALVLLAREQ
HQAQWRALCTERFLLRAGTLCAEVSGTPSPSQDSHT
>Mature_516_residues
MLSDVNLSFFTGEIHALLGKNGAGKSTLAHILSGFCVPTHGQLRLDGKEQRFSVPFDALRAGIGIVHQQPVFAERATVFE
NVVMGSAALTGVRWVRRAQVRERIDRIIAQWRMPLKKEEYVACLSADKRFFVSLLCVLFRNPRFIILDEPRCAPAQSRAV
FFSHLEEFFVRSSHAPRCGGGVIVVTHRFADALRWAQRISLIEGGKACSFLRTDLLDEYCSAHQVNECIQKVSCALMSAS
TVTSSAVSSFSSLSDTQSCATVPRTSSARPWVLRVESLQVSKHADVPLTDISFSVAASAIIGIVGTPEDGVHVLEDILCG
MHAGASRTHCTGNILLQEHDQVWCLPLQRNTPSLLRAHGVACVPSNCIQRGASMQLTLFDLLVPYTLRTWRTRVRAQMRF
VARLLAEEEIYCDPLQPACTLSGGQLQRVILARELATRPRLLILAEPAEGLDSASEQRLLARLRQVAQAGTALVLLAREQ
HQAQWRALCTERFLLRAGTLCAEVSGTPSPSQDSHT

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: COG3845

COG function: function code R; ABC-type uncharacterized transport systems, ATPase components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI47078218, Length=207, Percent_Identity=27.0531400966184, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI45446740, Length=207, Percent_Identity=27.0531400966184, Blast_Score=76, Evalue=9e-14,
Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=24.5192307692308, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI150417984, Length=225, Percent_Identity=28.4444444444444, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI105990541, Length=204, Percent_Identity=26.4705882352941, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI42741659, Length=211, Percent_Identity=29.8578199052133, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI21536376, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI27262624, Length=148, Percent_Identity=31.7567567567568, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI27262626, Length=148, Percent_Identity=31.7567567567568, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1787792, Length=492, Percent_Identity=25.609756097561, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790190, Length=489, Percent_Identity=22.6993865030675, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1790525, Length=495, Percent_Identity=24.2424242424242, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788897, Length=527, Percent_Identity=25.6166982922201, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788472, Length=526, Percent_Identity=21.2927756653992, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789991, Length=502, Percent_Identity=24.7011952191235, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI48995001, Length=492, Percent_Identity=22.7642276422764, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1788210, Length=205, Percent_Identity=28.2926829268293, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87081791, Length=233, Percent_Identity=28.3261802575107, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786563, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081782, Length=206, Percent_Identity=28.6407766990291, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786654, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=27.1428571428571, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788761, Length=153, Percent_Identity=28.1045751633987, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789593, Length=207, Percent_Identity=27.0531400966184, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87082268, Length=205, Percent_Identity=27.3170731707317, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787089, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=210, Percent_Identity=30, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=213, Percent_Identity=30.5164319248826, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=210, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24659289, Length=211, Percent_Identity=29.8578199052133, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24666092, Length=275, Percent_Identity=24.3636363636364, Blast_Score=66, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 56814; Mature: 56814

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSDVNLSFFTGEIHALLGKNGAGKSTLAHILSGFCVPTHGQLRLDGKEQRFSVPFDALR
CCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHH
AGIGIVHQQPVFAERATVFENVVMGSAALTGVRWVRRAQVRERIDRIIAQWRMPLKKEEY
HCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VACLSADKRFFVSLLCVLFRNPRFIILDEPRCAPAQSRAVFFSHLEEFFVRSSHAPRCGG
HHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
GVIVVTHRFADALRWAQRISLIEGGKACSFLRTDLLDEYCSAHQVNECIQKVSCALMSAS
CEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVTSSAVSSFSSLSDTQSCATVPRTSSARPWVLRVESLQVSKHADVPLTDISFSVAASAI
HHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHH
IGIVGTPEDGVHVLEDILCGMHAGASRTHCTGNILLQEHDQVWCLPLQRNTPSLLRAHGV
HEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHCCC
ACVPSNCIQRGASMQLTLFDLLVPYTLRTWRTRVRAQMRFVARLLAEEEIYCDPLQPACT
EECCHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
LSGGQLQRVILARELATRPRLLILAEPAEGLDSASEQRLLARLRQVAQAGTALVLLAREQ
CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHH
HQAQWRALCTERFLLRAGTLCAEVSGTPSPSQDSHT
HHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCC
>Mature Secondary Structure
MLSDVNLSFFTGEIHALLGKNGAGKSTLAHILSGFCVPTHGQLRLDGKEQRFSVPFDALR
CCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHH
AGIGIVHQQPVFAERATVFENVVMGSAALTGVRWVRRAQVRERIDRIIAQWRMPLKKEEY
HCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VACLSADKRFFVSLLCVLFRNPRFIILDEPRCAPAQSRAVFFSHLEEFFVRSSHAPRCGG
HHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
GVIVVTHRFADALRWAQRISLIEGGKACSFLRTDLLDEYCSAHQVNECIQKVSCALMSAS
CEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVTSSAVSSFSSLSDTQSCATVPRTSSARPWVLRVESLQVSKHADVPLTDISFSVAASAI
HHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHH
IGIVGTPEDGVHVLEDILCGMHAGASRTHCTGNILLQEHDQVWCLPLQRNTPSLLRAHGV
HEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHCCC
ACVPSNCIQRGASMQLTLFDLLVPYTLRTWRTRVRAQMRFVARLLAEEEIYCDPLQPACT
EECCHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
LSGGQLQRVILARELATRPRLLILAEPAEGLDSASEQRLLARLRQVAQAGTALVLLAREQ
CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHH
HQAQWRALCTERFLLRAGTLCAEVSGTPSPSQDSHT
HHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA