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The map label for this gene is ylbH [H]

Identifier: 189025299

GI number: 189025299

Start: 71773

End: 72360

Strand: Direct

Name: ylbH [H]

Synonym: TPASS_0065

Alternate gene names: 189025299

Gene position: 71773-72360 (Clockwise)

Preceding gene: 189025298

Following gene: 189025300

Centisome position: 6.3

GC content: 49.83

Gene sequence:

>588_bases
ATGCTAAAAAACCACGTATTACGTTGTCCGGATGGTCCTATCCGTCCTGCAATGGATCGCATGCGTGAGTCGTTATTTGC
GATTTTGGGTGATATGCGCGGCTGTTCCTTTTTGGATCTTTTCGCCGGATCGGGAGTGTGCGGCTTGGAGGCTTATTCAC
GCGGGGCGTATCCGGTAGTGTTTGTAGAGTGGAATGTGCGTTCTTTTTCTGTTTTGTTGCAGAACGTGCAAGTGGCGCTG
TGTCGTTTGGAATGTAGATGTATGGCAGTGGAGCGGTATATTGCGCGTGCACGTACGCTGTTTCATTTTGTTTATCTTGA
TCCACCTTTTCCCTATCGCTTTCACGCTGAGCTGTTGCAGCGGCTTTCTCGTGCGTCATTGTGTAGAGAAGGAAGCGTGG
TGATGGTGCACCGACCAAGAGAGAAAAAACTTGCGGATAAAATCGATTCACTTGTGCGGACCGATCAGCGTGTGTACGGG
CGCTCGGTAGTTGATTTTTACCGCAGGATAAAGCCGGTCTTGCGTAGAACTGAAACCCGTTGTAGGATCTTGCTGTTTTT
TGTGCGAGGGGATGCAGAGGGTGCTTGA

Upstream 100 bases:

>100_bases
GAGATAGATGAGTTGCTTGAGCATTAGGTAATCCGCTTGCTTGTTACAAGGCGCGACGTTTTGTGTACGGAGGTTGGCAC
GGGTGAGGATTACGGGGGGG

Downstream 100 bases:

>100_bases
GAGCGACACGCCGTACTTCGTTAAAGGTATACAGCGCCCTGTTTCCACTCTCTCCGATCGCGACCGGGCGCTGCTAAACA
GGCGGGGCAATGCATACCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MLKNHVLRCPDGPIRPAMDRMRESLFAILGDMRGCSFLDLFAGSGVCGLEAYSRGAYPVVFVEWNVRSFSVLLQNVQVAL
CRLECRCMAVERYIARARTLFHFVYLDPPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYG
RSVVDFYRRIKPVLRRTETRCRILLFFVRGDAEGA

Sequences:

>Translated_195_residues
MLKNHVLRCPDGPIRPAMDRMRESLFAILGDMRGCSFLDLFAGSGVCGLEAYSRGAYPVVFVEWNVRSFSVLLQNVQVAL
CRLECRCMAVERYIARARTLFHFVYLDPPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYG
RSVVDFYRRIKPVLRRTETRCRILLFFVRGDAEGA
>Mature_195_residues
MLKNHVLRCPDGPIRPAMDRMRESLFAILGDMRGCSFLDLFAGSGVCGLEAYSRGAYPVVFVEWNVRSFSVLLQNVQVAL
CRLECRCMAVERYIARARTLFHFVYLDPPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYG
RSVVDFYRRIKPVLRRTETRCRILLFFVRGDAEGA

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 22595; Mature: 22595

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNHVLRCPDGPIRPAMDRMRESLFAILGDMRGCSFLDLFAGSGVCGLEAYSRGAYPVV
CCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHCCCCCEEE
FVEWNVRSFSVLLQNVQVALCRLECRCMAVERYIARARTLFHFVYLDPPFPYRFHAELLQ
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
RLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYGRSVVDFYRRIKPVLRRTETR
HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
CRILLFFVRGDAEGA
EEEEEEEEECCCCCC
>Mature Secondary Structure
MLKNHVLRCPDGPIRPAMDRMRESLFAILGDMRGCSFLDLFAGSGVCGLEAYSRGAYPVV
CCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHCCCCCEEE
FVEWNVRSFSVLLQNVQVALCRLECRCMAVERYIARARTLFHFVYLDPPFPYRFHAELLQ
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
RLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYGRSVVDFYRRIKPVLRRTETR
HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
CRILLFFVRGDAEGA
EEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]