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The map label for this gene is rpsF

Identifier: 189025297

GI number: 189025297

Start: 70701

End: 70982

Strand: Reverse

Name: rpsF

Synonym: TPASS_0063

Alternate gene names: 189025297

Gene position: 70982-70701 (Counterclockwise)

Preceding gene: 189025303

Following gene: 189025296

Centisome position: 6.23

GC content: 53.55

Gene sequence:

>282_bases
ATGAGGACCTACGAGCTAATGGCCGTTTTCAGTGCACACGAGGATCTCTTTCTTCAGGGTTCCACCGCCGTTCGTGCCCT
CCTACAGGAAAACGACGCAGTCATCGCCCGCGAAGACCATATTGGAGAGCGGGAACTTGCGTATCCTCTGAAGAAGCAAA
AGAGGGGCCGTTACCTGCTCTTCATTGTTCAGTGTGAGCCGGGGAAGGTGCGCGAACTCGATCATAAGCTCAGATTGCGA
CACGACTTACTCACGCACTTGTTTGTGCGTGTCGATTCCTGA

Upstream 100 bases:

>100_bases
CGCTACGCTGGCGTCTCGCCGCGCGTTCTGCGCACGCTACTCCTCCTTGTCGGGTGAGTCTAGTGCAGCCTGATAAGGTG
AGCCGTCCATAGGAGTTATT

Downstream 100 bases:

>100_bases
GAGAAGATATGGCAGACGTCAATCATGTAGTGCTCGTTGGTCGGCTTACGCGTGATGCGGAGCTCAAGTACACTTCTGCA
GGTGGTGCTCTGTGTCGTTT

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MRTYELMAVFSAHEDLFLQGSTAVRALLQENDAVIAREDHIGERELAYPLKKQKRGRYLLFIVQCEPGKVRELDHKLRLR
HDLLTHLFVRVDS

Sequences:

>Translated_93_residues
MRTYELMAVFSAHEDLFLQGSTAVRALLQENDAVIAREDHIGERELAYPLKKQKRGRYLLFIVQCEPGKVRELDHKLRLR
HDLLTHLFVRVDS
>Mature_93_residues
MRTYELMAVFSAHEDLFLQGSTAVRALLQENDAVIAREDHIGERELAYPLKKQKRGRYLLFIVQCEPGKVRELDHKLRLR
HDLLTHLFVRVDS

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_TREPA (O83102)

Other databases:

- EMBL:   AE000520
- PIR:   G71370
- RefSeq:   NP_218503.1
- ProteinModelPortal:   O83102
- SMR:   O83102
- IntAct:   O83102
- GeneID:   2611404
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0063
- NMPDR:   fig|243276.1.peg.62
- TIGR:   TP_0063
- HOGENOM:   HBG747554
- OMA:   PAKMIEL
- ProtClustDB:   PRK00453
- BioCyc:   TPAL243276:TP_0063-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60
- TIGRFAMs:   TIGR00166

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 10916; Mature: 10916

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTYELMAVFSAHEDLFLQGSTAVRALLQENDAVIAREDHIGERELAYPLKKQKRGRYLL
CCCHHEEEEECCCCCEEEECHHHHHHHHHCCCEEEEECCCCCCCHHCCCHHHCCCCCEEE
FIVQCEPGKVRELDHKLRLRHDLLTHLFVRVDS
EEEEECCCCCHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MRTYELMAVFSAHEDLFLQGSTAVRALLQENDAVIAREDHIGERELAYPLKKQKRGRYLL
CCCHHEEEEECCCCCEEEECHHHHHHHHHCCCEEEEECCCCCCCHHCCCHHHCCCCCEEE
FIVQCEPGKVRELDHKLRLRHDLLTHLFVRVDS
EEEEECCCCCHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876