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The map label for this gene is ybiF [C]

Identifier: 188587399

GI number: 188587399

Start: 3033403

End: 3034356

Strand: Reverse

Name: ybiF [C]

Synonym: Nther_2808

Alternate gene names: 188587399

Gene position: 3034356-3033403 (Counterclockwise)

Preceding gene: 188587400

Following gene: 188587398

Centisome position: 95.86

GC content: 39.31

Gene sequence:

>954_bases
TTGGATAATCAGGCAACAGGCACAGCCTATTTGCTTATAGCGATAGCTGCTGCCTTTTGGGGAGTTATCGGTTTATTTAT
TGTCCCTTTGTATCAGTTCGGATTTTCTCCCTTACAAGTAGTGGCTTTGAGAGCTATTTCAGCTTCAATTTTAATGCTAA
TATATGTGGGGATCTTCAATCCTTCTGCGTTAAAAATTTCTTTAAAAGATATTTGGTACTTTATTGGAACGGGAATAGTT
AGTATAGTATTCTTTAACTGGTGTTACTTTACTGCTATTCAGGAGATGTCACTTTCGATTGCTGTGGTGTTGCTATATAC
TGGCCCTGCTTTTGTTGCACTGCTTTCTTATATTTTTTTTAAAGAACCTCTGACCGGTAGAAAGCTGGCGGCCTTGGCTT
TTACATTAATTGGTTGTATGCTGGTTACAGGACTCCTACCTGCTAATGAAATATCAGTTTCACCCTTGGGACTATTATTG
GGGATAGGATCAGGATTTTTCTATGGTTTATACAGTATTTTTGGTAAGGCTGCTAGTTATAGATATTCATCTTTGACTAT
TACCATTTACACCTTTGTCTTTGCCGGACTTGCCTTGCTGCCTATGAGTGGAGTAATTGCAAACATGGGCGCCTTTGTGA
ACCCTTGGGTTTTGCTAAGTATTTTAGGACTGGGATTGATATCTACTGTTCTGGCCTATATTTTATATACCCTGGGGCTT
TCTCGTATAGAATCTAGCAAAGCTTCTATCATTGCCACTATTGAGCCTGTTGTGGCGGCTATATTAGGGAGAATTGTTTT
TGGTGAGCAGATGACTTTATGGCAAGGCGTAGGTATGTTAATAGTTATTTCGGCTGTGATACTGGTATCAGAAAGGACTG
GGGAAACTGAAAAAAAGCCATTTGTCCCTGAAGCCGATGAAATGCAGAATAAAAGTCATGAAGGGGGAAAATAA

Upstream 100 bases:

>100_bases
CACGGACAGATGGTTCTATAGCAGTTTATTAAATTTAAAAAAGCCGATTGTTTTAATCAATATGTTGAAAATAATATATT
GCCTCGAAAGGAAGTGAATT

Downstream 100 bases:

>100_bases
ATGCAGATAATTAGCGCAAGCCGTCGCACAGATATCCCAGCTTTTTTTGGGGAATGGTTTAAAAATAGAATCAAAGAAGG
TTTTTTCTATAGTGTAAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MDNQATGTAYLLIAIAAAFWGVIGLFIVPLYQFGFSPLQVVALRAISASILMLIYVGIFNPSALKISLKDIWYFIGTGIV
SIVFFNWCYFTAIQEMSLSIAVVLLYTGPAFVALLSYIFFKEPLTGRKLAALAFTLIGCMLVTGLLPANEISVSPLGLLL
GIGSGFFYGLYSIFGKAASYRYSSLTITIYTFVFAGLALLPMSGVIANMGAFVNPWVLLSILGLGLISTVLAYILYTLGL
SRIESSKASIIATIEPVVAAILGRIVFGEQMTLWQGVGMLIVISAVILVSERTGETEKKPFVPEADEMQNKSHEGGK

Sequences:

>Translated_317_residues
MDNQATGTAYLLIAIAAAFWGVIGLFIVPLYQFGFSPLQVVALRAISASILMLIYVGIFNPSALKISLKDIWYFIGTGIV
SIVFFNWCYFTAIQEMSLSIAVVLLYTGPAFVALLSYIFFKEPLTGRKLAALAFTLIGCMLVTGLLPANEISVSPLGLLL
GIGSGFFYGLYSIFGKAASYRYSSLTITIYTFVFAGLALLPMSGVIANMGAFVNPWVLLSILGLGLISTVLAYILYTLGL
SRIESSKASIIATIEPVVAAILGRIVFGEQMTLWQGVGMLIVISAVILVSERTGETEKKPFVPEADEMQNKSHEGGK
>Mature_317_residues
MDNQATGTAYLLIAIAAAFWGVIGLFIVPLYQFGFSPLQVVALRAISASILMLIYVGIFNPSALKISLKDIWYFIGTGIV
SIVFFNWCYFTAIQEMSLSIAVVLLYTGPAFVALLSYIFFKEPLTGRKLAALAFTLIGCMLVTGLLPANEISVSPLGLLL
GIGSGFFYGLYSIFGKAASYRYSSLTITIYTFVFAGLALLPMSGVIANMGAFVNPWVLLSILGLGLISTVLAYILYTLGL
SRIESSKASIIATIEPVVAAILGRIVFGEQMTLWQGVGMLIVISAVILVSERTGETEKKPFVPEADEMQNKSHEGGK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1787033, Length=250, Percent_Identity=27.2, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34139; Mature: 34139

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQATGTAYLLIAIAAAFWGVIGLFIVPLYQFGFSPLQVVALRAISASILMLIYVGIFN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PSALKISLKDIWYFIGTGIVSIVFFNWCYFTAIQEMSLSIAVVLLYTGPAFVALLSYIFF
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHH
KEPLTGRKLAALAFTLIGCMLVTGLLPANEISVSPLGLLLGIGSGFFYGLYSIFGKAASY
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
RYSSLTITIYTFVFAGLALLPMSGVIANMGAFVNPWVLLSILGLGLISTVLAYILYTLGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRIESSKASIIATIEPVVAAILGRIVFGEQMTLWQGVGMLIVISAVILVSERTGETEKKP
HHHHCCCHHEEEHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
FVPEADEMQNKSHEGGK
CCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MDNQATGTAYLLIAIAAAFWGVIGLFIVPLYQFGFSPLQVVALRAISASILMLIYVGIFN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PSALKISLKDIWYFIGTGIVSIVFFNWCYFTAIQEMSLSIAVVLLYTGPAFVALLSYIFF
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHH
KEPLTGRKLAALAFTLIGCMLVTGLLPANEISVSPLGLLLGIGSGFFYGLYSIFGKAASY
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
RYSSLTITIYTFVFAGLALLPMSGVIANMGAFVNPWVLLSILGLGLISTVLAYILYTLGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRIESSKASIIATIEPVVAAILGRIVFGEQMTLWQGVGMLIVISAVILVSERTGETEKKP
HHHHCCCHHEEEHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
FVPEADEMQNKSHEGGK
CCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]