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The map label for this gene is dan [H]

Identifier: 188587346

GI number: 188587346

Start: 2972438

End: 2974030

Strand: Reverse

Name: dan [H]

Synonym: Nther_2753

Alternate gene names: 188587346

Gene position: 2974030-2972438 (Counterclockwise)

Preceding gene: 188587347

Following gene: 188587345

Centisome position: 93.95

GC content: 38.67

Gene sequence:

>1593_bases
ATGTTTGATATTATCATCTGTAATGGCAAGATAATTGATGGCACGGGTAGCCCCTGGTTTTACGGTGATATAGCTGTTAA
GGATAATGAAATCGCTGCTATTGGTGATCTACATCAGAAAGAAGCTAGTGAAATTATTGACGCTCAGGGCAAGGTGATAG
CTCCTGGTTTTATAGACATTCATTCTCATTCCGATGACAAATTTCTTAAAGATATTCGGGCGGAAGGTAAACTTCGTCAG
GGTGTTACCACAGAAGTGATGGGGCAATGTGGTAATTCTATTGCACCATTACAGGGACCAAATCGGGACATTGTGGTGGA
TGAATTAAAAAAAGAAGGAATTAAAGCTTGCTGGGAGTCTTTTTCCGAGTATTTTAATCTACTTCAAAAACGAGGCTTGC
CAGTTAATGTAGTGGGTGTTGTAGGACATGGCACTCTCAGAAAACAGGTCATGGGTTATGAAGCTCGCCAGGCTACAGAA
CAAGAACTCTCTCGAATGAAAGAAATATTAGCATCTGCCCTAAATGATGGAGCATTTGGAATGAGTTCTGGGCTAATTTA
TCCCCCTGGGAGCTATGCAGATGATCACGAGTTAATTGAATTACTTACTATAGTATCAAATTATAATGGGATTTACATGA
CTCATATGGAAAATGAAGGAGATAGATTAATCGACTCCCTTAATAACACTATTAAAGTAGCTGAATCGGCCGGTGTTAAA
GTCCAGATATCTCATCACAAAGCCGTAGGAAGATCAAATTGGGGAAAAGTATCTAAAACTCTTGCCTTAGTAGACAAAGC
GAGACAAACAGGAGTAGATATTACTATGGATCAGTATCCTTATACTGCTACTAGTACAGGATTAGTATCATTACTTCCCC
AAGAAATTTTAGAAGGGGGTCGTAGGGCATGTTTGGAACGATTGACCAGAAAAGAAAAGCGAGAAAAATTAAAAAAATAT
TTGCGAGAATCATTTGAACAAGATCGCAAATGGTCTGATATATTAATTGCCCGGGTCAAAACAAACCATAACAAAGATTT
GGAAGGGAGAACCATTTCGGATATTGCCAGTGATTGGAAACGCGATCCTGAAGAAGTTGTGATGAATATCTTGGTAGAAG
AGGAACTACACTGCCAGATGATTGCATTTTCCATGAGTGAAGATGATGTTAAAAAAGTTATGAAAAGTCCTTATGTTATG
ATAGGAAGTGATGGTTCATCTCTTTCAACTAAAGGACCTTTAAGTGAAGGTAGACCACATCCGAGAAATTTTGGGACCTT
TCCCCGCGTAATTGGTAAATACGCCAGGGACGAGAAGGTATTATCCTTAGAAGAAGCTATTTGGAAGATGACTGGTTTTC
CAGCAACTCGTTTAGGACTTTATAATCGAGGATTATTAAGACCAGGTTTTTACGCTGATATTGTGGTATTTGATCAAGAT
AAAATCAAGGACATGGCAAACTTTGATAATCCTTGTCAGTATCCAGTTGGAATTGATGAAATATTTATCAATGGCCAACG
AGTCCTACAAAAAGGGCGATATAATGGTTCGCTTCCAGGCCAAGTTTTAAAAGCTAAGTCAGCATTAAAGTAG

Upstream 100 bases:

>100_bases
AAAGCCATGAAAGGTGTTCCCAACAAAAACCTTCTTTTAATAAAGTGAAGGCCGATCATTATGTATATTGTCATTTATAT
GAATAAAGGGGAGTCTTATT

Downstream 100 bases:

>100_bases
AATGGTAATAACAAAAGAAGCGGCTCAATAAGCCGCTTCTTTTGTTGTCTTTAATTATTGTTAAATTTCAGCTACTACCG
AGCAACAATCATCTTTAATC

Product: Amidohydrolase 3

Products: NA

Alternate protein names: N-acyl-D-amino-acid deacylase [H]

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MFDIIICNGKIIDGTGSPWFYGDIAVKDNEIAAIGDLHQKEASEIIDAQGKVIAPGFIDIHSHSDDKFLKDIRAEGKLRQ
GVTTEVMGQCGNSIAPLQGPNRDIVVDELKKEGIKACWESFSEYFNLLQKRGLPVNVVGVVGHGTLRKQVMGYEARQATE
QELSRMKEILASALNDGAFGMSSGLIYPPGSYADDHELIELLTIVSNYNGIYMTHMENEGDRLIDSLNNTIKVAESAGVK
VQISHHKAVGRSNWGKVSKTLALVDKARQTGVDITMDQYPYTATSTGLVSLLPQEILEGGRRACLERLTRKEKREKLKKY
LRESFEQDRKWSDILIARVKTNHNKDLEGRTISDIASDWKRDPEEVVMNILVEEELHCQMIAFSMSEDDVKKVMKSPYVM
IGSDGSSLSTKGPLSEGRPHPRNFGTFPRVIGKYARDEKVLSLEEAIWKMTGFPATRLGLYNRGLLRPGFYADIVVFDQD
KIKDMANFDNPCQYPVGIDEIFINGQRVLQKGRYNGSLPGQVLKAKSALK

Sequences:

>Translated_530_residues
MFDIIICNGKIIDGTGSPWFYGDIAVKDNEIAAIGDLHQKEASEIIDAQGKVIAPGFIDIHSHSDDKFLKDIRAEGKLRQ
GVTTEVMGQCGNSIAPLQGPNRDIVVDELKKEGIKACWESFSEYFNLLQKRGLPVNVVGVVGHGTLRKQVMGYEARQATE
QELSRMKEILASALNDGAFGMSSGLIYPPGSYADDHELIELLTIVSNYNGIYMTHMENEGDRLIDSLNNTIKVAESAGVK
VQISHHKAVGRSNWGKVSKTLALVDKARQTGVDITMDQYPYTATSTGLVSLLPQEILEGGRRACLERLTRKEKREKLKKY
LRESFEQDRKWSDILIARVKTNHNKDLEGRTISDIASDWKRDPEEVVMNILVEEELHCQMIAFSMSEDDVKKVMKSPYVM
IGSDGSSLSTKGPLSEGRPHPRNFGTFPRVIGKYARDEKVLSLEEAIWKMTGFPATRLGLYNRGLLRPGFYADIVVFDQD
KIKDMANFDNPCQYPVGIDEIFINGQRVLQKGRYNGSLPGQVLKAKSALK
>Mature_530_residues
MFDIIICNGKIIDGTGSPWFYGDIAVKDNEIAAIGDLHQKEASEIIDAQGKVIAPGFIDIHSHSDDKFLKDIRAEGKLRQ
GVTTEVMGQCGNSIAPLQGPNRDIVVDELKKEGIKACWESFSEYFNLLQKRGLPVNVVGVVGHGTLRKQVMGYEARQATE
QELSRMKEILASALNDGAFGMSSGLIYPPGSYADDHELIELLTIVSNYNGIYMTHMENEGDRLIDSLNNTIKVAESAGVK
VQISHHKAVGRSNWGKVSKTLALVDKARQTGVDITMDQYPYTATSTGLVSLLPQEILEGGRRACLERLTRKEKREKLKKY
LRESFEQDRKWSDILIARVKTNHNKDLEGRTISDIASDWKRDPEEVVMNILVEEELHCQMIAFSMSEDDVKKVMKSPYVM
IGSDGSSLSTKGPLSEGRPHPRNFGTFPRVIGKYARDEKVLSLEEAIWKMTGFPATRLGLYNRGLLRPGFYADIVVFDQD
KIKDMANFDNPCQYPVGIDEIFINGQRVLQKGRYNGSLPGQVLKAKSALK

Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.81 [H]

Molecular weight: Translated: 59132; Mature: 59132

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIIICNGKIIDGTGSPWFYGDIAVKDNEIAAIGDLHQKEASEIIDAQGKVIAPGFIDI
CEEEEEECCEEECCCCCCEEEEEEEEECCCEEEHHHHHHHHHHHHHCCCCCEECCCEEEE
HSHSDDKFLKDIRAEGKLRQGVTTEVMGQCGNSIAPLQGPNRDIVVDELKKEGIKACWES
CCCCCHHHHHHHHHCCHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FSEYFNLLQKRGLPVNVVGVVGHGTLRKQVMGYEARQATEQELSRMKEILASALNDGAFG
HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
MSSGLIYPPGSYADDHELIELLTIVSNYNGIYMTHMENEGDRLIDSLNNTIKVAESAGVK
CCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCHHEEECCCCCCE
VQISHHKAVGRSNWGKVSKTLALVDKARQTGVDITMDQYPYTATSTGLVSLLPQEILEGG
EEEECCHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
RRACLERLTRKEKREKLKKYLRESFEQDRKWSDILIARVKTNHNKDLEGRTISDIASDWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCCCCHHHHHHHHC
RDPEEVVMNILVEEELHCQMIAFSMSEDDVKKVMKSPYVMIGSDGSSLSTKGPLSEGRPH
CCHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC
PRNFGTFPRVIGKYARDEKVLSLEEAIWKMTGFPATRLGLYNRGLLRPGFYADIVVFDQD
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEEEECHH
KIKDMANFDNPCQYPVGIDEIFINGQRVLQKGRYNGSLPGQVLKAKSALK
HHHHHHCCCCCCCCCCCHHHHEECHHHHHHCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MFDIIICNGKIIDGTGSPWFYGDIAVKDNEIAAIGDLHQKEASEIIDAQGKVIAPGFIDI
CEEEEEECCEEECCCCCCEEEEEEEEECCCEEEHHHHHHHHHHHHHCCCCCEECCCEEEE
HSHSDDKFLKDIRAEGKLRQGVTTEVMGQCGNSIAPLQGPNRDIVVDELKKEGIKACWES
CCCCCHHHHHHHHHCCHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FSEYFNLLQKRGLPVNVVGVVGHGTLRKQVMGYEARQATEQELSRMKEILASALNDGAFG
HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
MSSGLIYPPGSYADDHELIELLTIVSNYNGIYMTHMENEGDRLIDSLNNTIKVAESAGVK
CCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCHHEEECCCCCCE
VQISHHKAVGRSNWGKVSKTLALVDKARQTGVDITMDQYPYTATSTGLVSLLPQEILEGG
EEEECCHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
RRACLERLTRKEKREKLKKYLRESFEQDRKWSDILIARVKTNHNKDLEGRTISDIASDWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCCCCHHHHHHHHC
RDPEEVVMNILVEEELHCQMIAFSMSEDDVKKVMKSPYVMIGSDGSSLSTKGPLSEGRPH
CCHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC
PRNFGTFPRVIGKYARDEKVLSLEEAIWKMTGFPATRLGLYNRGLLRPGFYADIVVFDQD
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEEEECHH
KIKDMANFDNPCQYPVGIDEIFINGQRVLQKGRYNGSLPGQVLKAKSALK
HHHHHHCCCCCCCCCCCHHHHEECHHHHHHCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8541651 [H]