Click here to switch to the map view.

The map label for this gene is 188587323

Identifier: 188587323

GI number: 188587323

Start: 2944451

End: 2944867

Strand: Reverse

Name: 188587323

Synonym: Nther_2728

Alternate gene names: NA

Gene position: 2944867-2944451 (Counterclockwise)

Preceding gene: 188587325

Following gene: 188587322

Centisome position: 93.03

GC content: 41.73

Gene sequence:

>417_bases
ATGAAATCTCAAACAGAATACTTGTGGTTTGAAACTAACCACAGAAGGGAGTTTATTAATATTACTCCCCAGGTTGAAAA
GGTAGTTCAACAAAGCGGGGTTAAGGAAGGAATTTGCTTGGTAAATGCTATGCATTTGACTGCCAGTGTATTTATTAATG
ATGACGAGTCAGGCTTGCATCAGGATTATGAAAAGTGGTTGGAGGAACTGGCCCCTCATGAACCCGTTTCCCAGTACGCT
CATAACACGGTGGAAGATAATGCTGATGCTCATATGAAACGTCAGGTCATGGGGCGTGAAGTGGTTGTGGCAATTACAGA
TGGTAAGTTGGATTTCGGTCCATGGGAACAAATCTTTTACGGTGAATTTGATGGTCGTCGTAAGAAGCGGGTTTTAGTTA
AAGTCATTGGTGAATAA

Upstream 100 bases:

>100_bases
ATTTTACTTGAATTACAGAATTTTTTTAAAAACGATTTAATTGTTTATTGTTTTGTCTTATGAATTAAAAATCTTTCTTT
GGGAGGTGAAAGTCAATAAT

Downstream 100 bases:

>100_bases
GGGAGTGGGTGTGTGTGGATTTTGGTGCAAAATTATCTCAAAGAGAACTTAAGTCTTTGGAAAGTTTTTTAGCTAATGTT
CAAAGGGATCATGATTCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKSQTEYLWFETNHRREFINITPQVEKVVQQSGVKEGICLVNAMHLTASVFINDDESGLHQDYEKWLEELAPHEPVSQYA
HNTVEDNADAHMKRQVMGREVVVAITDGKLDFGPWEQIFYGEFDGRRKKRVLVKVIGE

Sequences:

>Translated_138_residues
MKSQTEYLWFETNHRREFINITPQVEKVVQQSGVKEGICLVNAMHLTASVFINDDESGLHQDYEKWLEELAPHEPVSQYA
HNTVEDNADAHMKRQVMGREVVVAITDGKLDFGPWEQIFYGEFDGRRKKRVLVKVIGE
>Mature_138_residues
MKSQTEYLWFETNHRREFINITPQVEKVVQQSGVKEGICLVNAMHLTASVFINDDESGLHQDYEKWLEELAPHEPVSQYA
HNTVEDNADAHMKRQVMGREVVVAITDGKLDFGPWEQIFYGEFDGRRKKRVLVKVIGE

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 16003; Mature: 16003

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSQTEYLWFETNHRREFINITPQVEKVVQQSGVKEGICLVNAMHLTASVFINDDESGLH
CCCCCCEEEEECCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHEEEEEEEEECCCCCCHH
QDYEKWLEELAPHEPVSQYAHNTVEDNADAHMKRQVMGREVVVAITDGKLDFGPWEQIFY
HHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHEEE
GEFDGRRKKRVLVKVIGE
CCCCCCCHHEEHEEEECC
>Mature Secondary Structure
MKSQTEYLWFETNHRREFINITPQVEKVVQQSGVKEGICLVNAMHLTASVFINDDESGLH
CCCCCCEEEEECCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHEEEEEEEEECCCCCCHH
QDYEKWLEELAPHEPVSQYAHNTVEDNADAHMKRQVMGREVVVAITDGKLDFGPWEQIFY
HHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHEEE
GEFDGRRKKRVLVKVIGE
CCCCCCCHHEEHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]