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The map label for this gene is prdB [H]

Identifier: 188587310

GI number: 188587310

Start: 2930698

End: 2930949

Strand: Direct

Name: prdB [H]

Synonym: Nther_2713

Alternate gene names: 188587310

Gene position: 2930698-2930949 (Clockwise)

Preceding gene: 188587309

Following gene: 188587315

Centisome position: 92.58

GC content: 40.48

Gene sequence:

>252_bases
GTGATTGTGCAGAGAAGGGTTGAAGAAGCCGGTATACCAACAATAATGATTGCCGCTCTGCATCCTGTAGCTAAACAGCA
AGGTTCACCTAGAGCTGTTCACGCTTTAGTTCCCATGGGTGCCAATGTAGGCCCTCCCAATGATGTAAAAGTGCAAAAGA
ATATTATACGAGAAGCCCTGCAAAACCTTATTGAAATAGATGAACCAGGTAAGTTTATTAGTATACCTTATGAATACCAA
GCAAAAATATAA

Upstream 100 bases:

>100_bases
CAATGATAGTGTAGGTCCAGAAATAGCACAGCAATTGAAAGAAGCTGAAGCAGGAGCAGCCATTTTCACTGCTGGATGAG
GAACTTGTCATCGCTCTGCC

Downstream 100 bases:

>100_bases
AACTTGGTAACAAAAAAGCCCTCAAGGATACATAACATTGCCCACAACTGCTATCAGTATCAGTTGGTGACAATGTCCTT
GAGGGCAAATTCTTTAAGGA

Product: D-proline reductase (dithiol)

Products: NA

Alternate protein names: D-proline reductase 26 kDa subunit [H]

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MIVQRRVEEAGIPTIMIAALHPVAKQQGSPRAVHALVPMGANVGPPNDVKVQKNIIREALQNLIEIDEPGKFISIPYEYQ
AKI

Sequences:

>Translated_83_residues
MIVQRRVEEAGIPTIMIAALHPVAKQQGSPRAVHALVPMGANVGPPNDVKVQKNIIREALQNLIEIDEPGKFISIPYEYQ
AKI
>Mature_83_residues
MIVQRRVEEAGIPTIMIAALHPVAKQQGSPRAVHALVPMGANVGPPNDVKVQKNIIREALQNLIEIDEPGKFISIPYEYQ
AKI

Specific function: D-proline reductase catalyzes the reductive cleavage of a C-N bond in D-proline resulting in the formation of 5- aminovalerate. The alpha subunit has been shown to bind D-proline, presumably via the pyruvoyl group [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022787 [H]

Pfam domain/function: PF07355 GRDB [H]

EC number: =1.21.4.1 [H]

Molecular weight: Translated: 9123; Mature: 9123

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVQRRVEEAGIPTIMIAALHPVAKQQGSPRAVHALVPMGANVGPPNDVKVQKNIIREAL
CCCCCCHHHCCCCEEEHHHHCHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH
QNLIEIDEPGKFISIPYEYQAKI
HHHHCCCCCCCEEECCCEEECCC
>Mature Secondary Structure
MIVQRRVEEAGIPTIMIAALHPVAKQQGSPRAVHALVPMGANVGPPNDVKVQKNIIREAL
CCCCCCHHHCCCCEEEHHHHCHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH
QNLIEIDEPGKFISIPYEYQAKI
HHHHCCCCCCCEEECCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]