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The map label for this gene is dppC [H]

Identifier: 188587240

GI number: 188587240

Start: 2839799

End: 2840731

Strand: Direct

Name: dppC [H]

Synonym: Nther_2642

Alternate gene names: 188587240

Gene position: 2839799-2840731 (Clockwise)

Preceding gene: 188587239

Following gene: 188587241

Centisome position: 89.71

GC content: 41.91

Gene sequence:

>933_bases
ATGGAGGAACCAAAACAAGTCCAAAAACAGGGACAAACCCAAAACCAAGACCAAACTGCTGTTGACAAGCCATCCAGCAT
TTTGGGTGATGGCATCCGTCAATTCGCAAAAAATAAATTGGCTGTTATCAGCTTTGGAGTCGTTATTTTATTTATTCTTA
TGGGTATATTTGCACCACATATTGCACCTTCTAATGAGGATCCTATAGAACCTGTTTTACAGAGACGTCTTCAACCTGGA
ATTTGGGAGGGTAATTCCGAGACCCCCCTAGGGACCGATTCTTTGGGTAGAGATATCTTGACCCGCTTAATATACGGTGC
CCAAATTTCTTTAAGAGTAGGTTATGTAGTAATTGGTATTACTGCCGTTTTCGGAATTACTATTGGCTTAATCGCCGGTT
ATTTTGGAGGAAAAATAGATATGATATTTATGCGATTCATCGATATCATGTTATCTTTTCCACCTCTACTACTCGCCTTA
GTAGTTGTAGCGATTCTGGGGGCAGGTTTGGAAAATGCCATGCTGGCAATAGCCCTGGTTTATATTCCTCAGGTCGCCCG
AGTTGTCAGAAGTTCTGTATTAAAAGTAAGAGAAATGCCATACATTGAAGCTTGTAGAGCTATGGGGGGTTCAAATTTTT
GGATTATAATTTCCCATGTTTTACCCAATATACTGGCTTCTGCCGTGGTTTATTTAACTCTGTTACTGGGTGATGCAATC
CTTTACACGGCTGCTTTAGGATTTCTCGGAATTGGAATAGATCCGGCAACTCCCGAATGGGGGGCTATGTTAAGTGATGG
CAGAGATTACTTACTGGTAGGTGGTTGGTGGGTAACTCTTTTCCCTGGAGTTATGATCGCCCTTACTGTATTGTCATTCA
ACCTTTTTGGAGACGGCTTACGGGAAGCTTTTGACCCCAAAATGGACCTGTAA

Upstream 100 bases:

>100_bases
CCTGCTTTATGCCTATATTGACCCTAGAGTAAAGTACGAATAACTAACAACATAATTTCAACTCAACTGTAGATTTGACT
ATAGAAAGGATGGTTAATTA

Downstream 100 bases:

>100_bases
TAGCAATAGTTTATGACTAGATTGGGAGGGGAATATTTACATGGAAACTCTATTGGATATTCAAGATTTAAAAATACATT
TTTCCACTGAAAGAGGGTTA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MEEPKQVQKQGQTQNQDQTAVDKPSSILGDGIRQFAKNKLAVISFGVVILFILMGIFAPHIAPSNEDPIEPVLQRRLQPG
IWEGNSETPLGTDSLGRDILTRLIYGAQISLRVGYVVIGITAVFGITIGLIAGYFGGKIDMIFMRFIDIMLSFPPLLLAL
VVVAILGAGLENAMLAIALVYIPQVARVVRSSVLKVREMPYIEACRAMGGSNFWIIISHVLPNILASAVVYLTLLLGDAI
LYTAALGFLGIGIDPATPEWGAMLSDGRDYLLVGGWWVTLFPGVMIALTVLSFNLFGDGLREAFDPKMDL

Sequences:

>Translated_310_residues
MEEPKQVQKQGQTQNQDQTAVDKPSSILGDGIRQFAKNKLAVISFGVVILFILMGIFAPHIAPSNEDPIEPVLQRRLQPG
IWEGNSETPLGTDSLGRDILTRLIYGAQISLRVGYVVIGITAVFGITIGLIAGYFGGKIDMIFMRFIDIMLSFPPLLLAL
VVVAILGAGLENAMLAIALVYIPQVARVVRSSVLKVREMPYIEACRAMGGSNFWIIISHVLPNILASAVVYLTLLLGDAI
LYTAALGFLGIGIDPATPEWGAMLSDGRDYLLVGGWWVTLFPGVMIALTVLSFNLFGDGLREAFDPKMDL
>Mature_310_residues
MEEPKQVQKQGQTQNQDQTAVDKPSSILGDGIRQFAKNKLAVISFGVVILFILMGIFAPHIAPSNEDPIEPVLQRRLQPG
IWEGNSETPLGTDSLGRDILTRLIYGAQISLRVGYVVIGITAVFGITIGLIAGYFGGKIDMIFMRFIDIMLSFPPLLLAL
VVVAILGAGLENAMLAIALVYIPQVARVVRSSVLKVREMPYIEACRAMGGSNFWIIISHVLPNILASAVVYLTLLLGDAI
LYTAALGFLGIGIDPATPEWGAMLSDGRDYLLVGGWWVTLFPGVMIALTVLSFNLFGDGLREAFDPKMDL

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=277, Percent_Identity=41.1552346570397, Blast_Score=215, Evalue=4e-57,
Organism=Escherichia coli, GI1787760, Length=306, Percent_Identity=39.5424836601307, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI1789964, Length=288, Percent_Identity=45.8333333333333, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1787498, Length=301, Percent_Identity=35.5481727574751, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787549, Length=288, Percent_Identity=37.1527777777778, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789889, Length=228, Percent_Identity=35.0877192982456, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1788505, Length=224, Percent_Identity=33.0357142857143, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33618; Mature: 33618

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEPKQVQKQGQTQNQDQTAVDKPSSILGDGIRQFAKNKLAVISFGVVILFILMGIFAPH
CCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
IAPSNEDPIEPVLQRRLQPGIWEGNSETPLGTDSLGRDILTRLIYGAQISLRVGYVVIGI
CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TAVFGITIGLIAGYFGGKIDMIFMRFIDIMLSFPPLLLALVVVAILGAGLENAMLAIALV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
YIPQVARVVRSSVLKVREMPYIEACRAMGGSNFWIIISHVLPNILASAVVYLTLLLGDAI
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
LYTAALGFLGIGIDPATPEWGAMLSDGRDYLLVGGWWVTLFPGVMIALTVLSFNLFGDGL
HHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
REAFDPKMDL
HHHCCCCCCC
>Mature Secondary Structure
MEEPKQVQKQGQTQNQDQTAVDKPSSILGDGIRQFAKNKLAVISFGVVILFILMGIFAPH
CCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
IAPSNEDPIEPVLQRRLQPGIWEGNSETPLGTDSLGRDILTRLIYGAQISLRVGYVVIGI
CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TAVFGITIGLIAGYFGGKIDMIFMRFIDIMLSFPPLLLALVVVAILGAGLENAMLAIALV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
YIPQVARVVRSSVLKVREMPYIEACRAMGGSNFWIIISHVLPNILASAVVYLTLLLGDAI
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
LYTAALGFLGIGIDPATPEWGAMLSDGRDYLLVGGWWVTLFPGVMIALTVLSFNLFGDGL
HHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
REAFDPKMDL
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]