Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 188587239

GI number: 188587239

Start: 2838743

End: 2839741

Strand: Direct

Name: dppB [H]

Synonym: Nther_2641

Alternate gene names: 188587239

Gene position: 2838743-2839741 (Clockwise)

Preceding gene: 188587238

Following gene: 188587240

Centisome position: 89.68

GC content: 40.04

Gene sequence:

>999_bases
TTGTATGCTCTTAAAAGATTATTAGTAGCAATACCAACAGTAATTGGAGTATCCATCCTAGTATTTTTAATGATTCATCT
TATTCCTGGTGATCCTGCTCAGATGATGCTTTTTCCCAGAGGAACAGAAGCAGAAATCGAGCAATTGAGACAAGAATTAG
GACTCAACTTACCTATACATGTACAGTACTGGAATTGGGTCACTGATGCAATTCAGCTTGACCTGGGGACTTCAGTTCAG
AGAGGAGTTTCTGTAACATCTGAAGTATTTGGACGTTTTCCTGCGACTTTTGAGCTAGCTATTGCAGCTATCTTGATAGC
AGTCATTGTAGGTGTACCTTTAGGTGTAATTGCAGCTCAAAAAAGGAATTCTTGGATTGATTATACCTGCATTACAATAT
CTTTAATGGGTGTATCAATCCCAGTTTTTTGGCTAGGCCTAATGTTAATATTCATTTTCGCGGCCACTTTAGGAGTTTTA
CCTGTATCGGGAAGGATGCCCACAGGGGCCTCAATTGAATCTGTTACCGGTTTATACTTAATTGATACCCTGATAAGAGG
GGATTTGGGTTTATTCTGGCAAACTATTCGTCATCTATTTTTACCTGCCCTTTCACTAGCTTCTGTGCCGCTAGCATTAG
TAGTTAGGGTGACTCGTTCTAGCATGATTGAGGTCTTATCTGAAGATTATGTCCGAACAGCCAAGGCAAAGGGAACACCT
TATAGACTGGTGGTATTCAAACACGCTTTGAGAAATGCTTTGATCCCTGTAATTACAGTAGTCGGCTTACAGGTAGGCAG
GTTAATGGGAGGAGCGATTCTAACAGAAACTGTTTTTTCCTGGCCGGGAATGGGTAGATTATTAGTCAGTTCAATCCATG
CCAGGGATTATCCCTTGATACAAGGAACCGTTCTTATTTTTGCCATATTGTTTATCATTACAAATATAGTTGTCGACCTG
CTTTATGCCTATATTGACCCTAGAGTAAAGTACGAATAA

Upstream 100 bases:

>100_bases
CTAAGGATTTTGGGAAGGTTATTGGGAAAAAGTTTGTACCAACTCAATGTTGTGCAAACTTTTTCATTTTAAATTGTAGA
ATAAAGGAGGATTCATTGAA

Downstream 100 bases:

>100_bases
CTAACAACATAATTTCAACTCAACTGTAGATTTGACTATAGAAAGGATGGTTAATTAATGGAGGAACCAAAACAAGTCCA
AAAACAGGGACAAACCCAAA

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MYALKRLLVAIPTVIGVSILVFLMIHLIPGDPAQMMLFPRGTEAEIEQLRQELGLNLPIHVQYWNWVTDAIQLDLGTSVQ
RGVSVTSEVFGRFPATFELAIAAILIAVIVGVPLGVIAAQKRNSWIDYTCITISLMGVSIPVFWLGLMLIFIFAATLGVL
PVSGRMPTGASIESVTGLYLIDTLIRGDLGLFWQTIRHLFLPALSLASVPLALVVRVTRSSMIEVLSEDYVRTAKAKGTP
YRLVVFKHALRNALIPVITVVGLQVGRLMGGAILTETVFSWPGMGRLLVSSIHARDYPLIQGTVLIFAILFIITNIVVDL
LYAYIDPRVKYE

Sequences:

>Translated_332_residues
MYALKRLLVAIPTVIGVSILVFLMIHLIPGDPAQMMLFPRGTEAEIEQLRQELGLNLPIHVQYWNWVTDAIQLDLGTSVQ
RGVSVTSEVFGRFPATFELAIAAILIAVIVGVPLGVIAAQKRNSWIDYTCITISLMGVSIPVFWLGLMLIFIFAATLGVL
PVSGRMPTGASIESVTGLYLIDTLIRGDLGLFWQTIRHLFLPALSLASVPLALVVRVTRSSMIEVLSEDYVRTAKAKGTP
YRLVVFKHALRNALIPVITVVGLQVGRLMGGAILTETVFSWPGMGRLLVSSIHARDYPLIQGTVLIFAILFIITNIVVDL
LYAYIDPRVKYE
>Mature_332_residues
MYALKRLLVAIPTVIGVSILVFLMIHLIPGDPAQMMLFPRGTEAEIEQLRQELGLNLPIHVQYWNWVTDAIQLDLGTSVQ
RGVSVTSEVFGRFPATFELAIAAILIAVIVGVPLGVIAAQKRNSWIDYTCITISLMGVSIPVFWLGLMLIFIFAATLGVL
PVSGRMPTGASIESVTGLYLIDTLIRGDLGLFWQTIRHLFLPALSLASVPLALVVRVTRSSMIEVLSEDYVRTAKAKGTP
YRLVVFKHALRNALIPVITVVGLQVGRLMGGAILTETVFSWPGMGRLLVSSIHARDYPLIQGTVLIFAILFIITNIVVDL
LYAYIDPRVKYE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=46.865671641791, Blast_Score=313, Evalue=1e-86,
Organism=Escherichia coli, GI1787053, Length=331, Percent_Identity=44.7129909365559, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=47.0031545741325, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1789888, Length=332, Percent_Identity=37.3493975903614, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1787550, Length=278, Percent_Identity=39.2086330935252, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=34.7305389221557, Blast_Score=184, Evalue=7e-48,
Organism=Escherichia coli, GI1788504, Length=372, Percent_Identity=26.6129032258064, Blast_Score=134, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36495; Mature: 36495

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYALKRLLVAIPTVIGVSILVFLMIHLIPGDPAQMMLFPRGTEAEIEQLRQELGLNLPIH
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHHCCCCCEE
VQYWNWVTDAIQLDLGTSVQRGVSVTSEVFGRFPATFELAIAAILIAVIVGVPLGVIAAQ
EEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
KRNSWIDYTCITISLMGVSIPVFWLGLMLIFIFAATLGVLPVSGRMPTGASIESVTGLYL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
IDTLIRGDLGLFWQTIRHLFLPALSLASVPLALVVRVTRSSMIEVLSEDYVRTAKAKGTP
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YRLVVFKHALRNALIPVITVVGLQVGRLMGGAILTETVFSWPGMGRLLVSSIHARDYPLI
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
QGTVLIFAILFIITNIVVDLLYAYIDPRVKYE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYALKRLLVAIPTVIGVSILVFLMIHLIPGDPAQMMLFPRGTEAEIEQLRQELGLNLPIH
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHHCCCCCEE
VQYWNWVTDAIQLDLGTSVQRGVSVTSEVFGRFPATFELAIAAILIAVIVGVPLGVIAAQ
EEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
KRNSWIDYTCITISLMGVSIPVFWLGLMLIFIFAATLGVLPVSGRMPTGASIESVTGLYL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
IDTLIRGDLGLFWQTIRHLFLPALSLASVPLALVVRVTRSSMIEVLSEDYVRTAKAKGTP
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YRLVVFKHALRNALIPVITVVGLQVGRLMGGAILTETVFSWPGMGRLLVSSIHARDYPLI
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
QGTVLIFAILFIITNIVVDLLYAYIDPRVKYE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]