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The map label for this gene is ydaM [C]

Identifier: 188587051

GI number: 188587051

Start: 2616235

End: 2618973

Strand: Reverse

Name: ydaM [C]

Synonym: Nther_2443

Alternate gene names: 188587051

Gene position: 2618973-2616235 (Counterclockwise)

Preceding gene: 188587055

Following gene: 188587050

Centisome position: 82.73

GC content: 38.01

Gene sequence:

>2739_bases
ATGGATAATGAGAGATTAAATAATCAAAAAAGTGAACAAGAATTTATGAAAAGTTTATCCAGACTGGCGGAAAAGAATTA
TCAAATGCCTCTAGGGACGGTGGATTATCAATTTATAACAGATGAACTGTATTATCTATCGGGAGCTCGGGCTGTGATTT
TAAATACATACGAAAAAGATAATGAAAAAAGTATTACCAGGGCTGCTAGCGGATCAAAAGAAGTTTTAACTAAAGCCTGT
GAAATCTTAAACACAAAACTAATAGGTCAGAAGTGGGATGTAAACTTTAAACGTTTGGAAAACATGCAAAACGGTAGCCA
ACAGGCCTGGCAGCTTGAGGAGTATCATAGTTTACAAGAAATAGCTTCTGGTATCATTTCAAAAGAAAAATCACAACTTC
TTGAAAAAGAATTAGATTTAGGGACTGCTTATGGAATTATTATATTTTACAATAATCGGGTGATTGGCGATATTCTTTTT
GCCATGCCTAAAGATGCCAGGATTTATAACTCTGAAAAGATAGAACTGTACGTCAAAAATGTCGGTATAACCCTGATGCG
AACAGAAGCGGAGAAGTCCTTAAAAGAAAATTGGGATCTTTTGGATGGGGTCTTTGAGAGCATACAGGATGGCATATCAG
TTTTGAATAATGATCTGACCATTCGCTATACTAACCGTATTATAGCTGAATGGCATTATAAAAATTATCCTTTTAATGGT
AAAAAATGCTACCATGCCTATCATGATAGGGACAAGCCCTGTGATAGATGCCCATCAATCCGAGCTCTGGAAACAGGGGA
AATGGAACAGGAAGAGATAACAGTTACTACTGATGTGGGTGGTAAATGGCTCGAACTTTATAGTTATCCCCTTTTTGAAA
ATGGCAGTGACCATCCTACAGGGGTAGTTGAATTTGTCAGAGATATTACGGATCGGAAACATTCCACGGAGAAATTGAGA
AAAAATAAACAGTATTTTGAACATATTTTGGATTCTACTTATGACCCCTTGTGTGTACTTAATCGGGATTTGGAAATAGT
ATCACTAAATAAACATTACAGGGACATACTCGCAGAATATACAGGTAAATCCTTATGCCAGAGAGATTTAGTTGGTAAGG
ATCTGTTTTCAATGCAGGACTTTTTGCCCGATTTTTTGAAGGATGAATGTCATCAAGTTTTTAATAATGGAACTCCTTTG
ATAAAAGAAGAGAAATTCAAAATAAATGGAGAGCAATATTATGTTGAAGTCACCAAGTCTCCTGTTTTTGGAGACAATGG
GAAAGTCAAGTTTGTAATAATTGTTGTCAGGGATATTACCGAGCTCAAGAAAAAAGAATTACAGCTAAAGGAAAGTGAAC
GTAAGTTCCGCCAGTTGGCAGAAAATATTGATCATGTCTTTTGGATGCGTTCAAAGGACAATCAAAAGGTGATATATGTA
AATCCTGCTTATGAAACTGTGTGGAAACGACCTCGCCAGGAGCTGTATCAACGGGCAGATGCCTTTATTAAATATGTTCA
TCCTGATGACAAATATCATGTTAAACAGGAATATAAAGAGTTTTTGCAAACGGGAATATTCAACAGCGAGTACCGCATTG
TACGTCCCGATGGAGAAGTCAGGTGGATATGGTCCAGGTCAAATCCCGTTATGGACGAGAACGGCCGTGTGATTAGATAT
GCCGGGTTGGCTGTAGATATTACTGAACGGAAACAGGCCGAGGAAAAAATTAGATACTTGAGTTTTTACGATCGAGTGAC
TGGGCTGTATAACCGGGCTTATCTGGAAGAAGAAATCGAGCGCCTTGATGTGGAGAGACAACTTCCAATAAGCATTATTA
TTGCCGATGTTAATGGATTGAAACTAATCAATGATACATTTGGCCATGATAGGGGAGATGATCTACTGGAAAACGCAGCC
GGTATTTTAAAGAAGGTTTGTCGCCAGGAAGATATTATCGGCCGTTGGGGAGGGGATGAGTTTGTCATTTTATTACCCCA
GACTAGCTATACCAATGCCCAACAAGTGTTATCTAGAATCCACAATGAATGCAAACGCTATGAGCTTCAAACCTTTGCCC
TGGGAGTAGCTACTAAAACAAGTAAGGAGCAATCGATTAAGCAGGTCTTTAAAAGGGCAGAGGAGCGCATGTACAAAAAC
AAATTACAAGAAAGCAGTAAAGCTAAAAGCGATATAATTACTTCTCTGATTAACACCTTACTAGATAAAAGTGATGAATG
TAGTGACCATTTGAAGCGAGTTACAGAATTAGCCCAGGAAATGGGCAGAGCCTTGAAATTATCCAAACAAGAGCTAGAGA
GATTAGCTGACCTGGCTTATGTACATGATATTGGGAAAGTAGTGATTCCTGAGGAAATTTTTAATAAATCCGAAAAATTG
ACTAATGAAGATTGGATCAAAATTAAGGCTCATCCAGAAATAGGTCAACGGATTGCACGCTCTACCGAAAATCTAGTACA
CATAGCAGAAGAAATTGGGACTCACCATGAACGTTGGGATGGTCAGGGATATCCTTCAGGTCTTAAAGGTGAAGAAATTC
CACTTTTGGCAAGGATAATATCTATAGTAGATGCCTATGATGTGATGACAAGGGGCAGGATTTATCAAGCAGCAATTTCT
TCGGAAAAGGCCTTAAAAGAAATTGAACAAAAAGCAGGAACCCAATTTGATCCTCATCTGGCTGAAGTGTTTATAAATGA
AGTGAATCCAAATAATTAA

Upstream 100 bases:

>100_bases
TGATTGTATGGGAATAAAGACTTAGGATGGAATATAAGTATTATATTGTAAGAAATTGTAATAATATTAAGAGTCTAGCT
TGTCCTAAGGAGGCATAATT

Downstream 100 bases:

>100_bases
GAATCCTTTTATTTGCATGAATTTTCCAGTATAATAGTGGTATCGAACGTATGAATATTATATTTCCGAAATTATATTGG
AGGCGTTAATGTGGGGATTT

Product: diguanylate cyclase and metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 912; Mature: 912

Protein sequence:

>912_residues
MDNERLNNQKSEQEFMKSLSRLAEKNYQMPLGTVDYQFITDELYYLSGARAVILNTYEKDNEKSITRAASGSKEVLTKAC
EILNTKLIGQKWDVNFKRLENMQNGSQQAWQLEEYHSLQEIASGIISKEKSQLLEKELDLGTAYGIIIFYNNRVIGDILF
AMPKDARIYNSEKIELYVKNVGITLMRTEAEKSLKENWDLLDGVFESIQDGISVLNNDLTIRYTNRIIAEWHYKNYPFNG
KKCYHAYHDRDKPCDRCPSIRALETGEMEQEEITVTTDVGGKWLELYSYPLFENGSDHPTGVVEFVRDITDRKHSTEKLR
KNKQYFEHILDSTYDPLCVLNRDLEIVSLNKHYRDILAEYTGKSLCQRDLVGKDLFSMQDFLPDFLKDECHQVFNNGTPL
IKEEKFKINGEQYYVEVTKSPVFGDNGKVKFVIIVVRDITELKKKELQLKESERKFRQLAENIDHVFWMRSKDNQKVIYV
NPAYETVWKRPRQELYQRADAFIKYVHPDDKYHVKQEYKEFLQTGIFNSEYRIVRPDGEVRWIWSRSNPVMDENGRVIRY
AGLAVDITERKQAEEKIRYLSFYDRVTGLYNRAYLEEEIERLDVERQLPISIIIADVNGLKLINDTFGHDRGDDLLENAA
GILKKVCRQEDIIGRWGGDEFVILLPQTSYTNAQQVLSRIHNECKRYELQTFALGVATKTSKEQSIKQVFKRAEERMYKN
KLQESSKAKSDIITSLINTLLDKSDECSDHLKRVTELAQEMGRALKLSKQELERLADLAYVHDIGKVVIPEEIFNKSEKL
TNEDWIKIKAHPEIGQRIARSTENLVHIAEEIGTHHERWDGQGYPSGLKGEEIPLLARIISIVDAYDVMTRGRIYQAAIS
SEKALKEIEQKAGTQFDPHLAEVFINEVNPNN

Sequences:

>Translated_912_residues
MDNERLNNQKSEQEFMKSLSRLAEKNYQMPLGTVDYQFITDELYYLSGARAVILNTYEKDNEKSITRAASGSKEVLTKAC
EILNTKLIGQKWDVNFKRLENMQNGSQQAWQLEEYHSLQEIASGIISKEKSQLLEKELDLGTAYGIIIFYNNRVIGDILF
AMPKDARIYNSEKIELYVKNVGITLMRTEAEKSLKENWDLLDGVFESIQDGISVLNNDLTIRYTNRIIAEWHYKNYPFNG
KKCYHAYHDRDKPCDRCPSIRALETGEMEQEEITVTTDVGGKWLELYSYPLFENGSDHPTGVVEFVRDITDRKHSTEKLR
KNKQYFEHILDSTYDPLCVLNRDLEIVSLNKHYRDILAEYTGKSLCQRDLVGKDLFSMQDFLPDFLKDECHQVFNNGTPL
IKEEKFKINGEQYYVEVTKSPVFGDNGKVKFVIIVVRDITELKKKELQLKESERKFRQLAENIDHVFWMRSKDNQKVIYV
NPAYETVWKRPRQELYQRADAFIKYVHPDDKYHVKQEYKEFLQTGIFNSEYRIVRPDGEVRWIWSRSNPVMDENGRVIRY
AGLAVDITERKQAEEKIRYLSFYDRVTGLYNRAYLEEEIERLDVERQLPISIIIADVNGLKLINDTFGHDRGDDLLENAA
GILKKVCRQEDIIGRWGGDEFVILLPQTSYTNAQQVLSRIHNECKRYELQTFALGVATKTSKEQSIKQVFKRAEERMYKN
KLQESSKAKSDIITSLINTLLDKSDECSDHLKRVTELAQEMGRALKLSKQELERLADLAYVHDIGKVVIPEEIFNKSEKL
TNEDWIKIKAHPEIGQRIARSTENLVHIAEEIGTHHERWDGQGYPSGLKGEEIPLLARIISIVDAYDVMTRGRIYQAAIS
SEKALKEIEQKAGTQFDPHLAEVFINEVNPNN
>Mature_912_residues
MDNERLNNQKSEQEFMKSLSRLAEKNYQMPLGTVDYQFITDELYYLSGARAVILNTYEKDNEKSITRAASGSKEVLTKAC
EILNTKLIGQKWDVNFKRLENMQNGSQQAWQLEEYHSLQEIASGIISKEKSQLLEKELDLGTAYGIIIFYNNRVIGDILF
AMPKDARIYNSEKIELYVKNVGITLMRTEAEKSLKENWDLLDGVFESIQDGISVLNNDLTIRYTNRIIAEWHYKNYPFNG
KKCYHAYHDRDKPCDRCPSIRALETGEMEQEEITVTTDVGGKWLELYSYPLFENGSDHPTGVVEFVRDITDRKHSTEKLR
KNKQYFEHILDSTYDPLCVLNRDLEIVSLNKHYRDILAEYTGKSLCQRDLVGKDLFSMQDFLPDFLKDECHQVFNNGTPL
IKEEKFKINGEQYYVEVTKSPVFGDNGKVKFVIIVVRDITELKKKELQLKESERKFRQLAENIDHVFWMRSKDNQKVIYV
NPAYETVWKRPRQELYQRADAFIKYVHPDDKYHVKQEYKEFLQTGIFNSEYRIVRPDGEVRWIWSRSNPVMDENGRVIRY
AGLAVDITERKQAEEKIRYLSFYDRVTGLYNRAYLEEEIERLDVERQLPISIIIADVNGLKLINDTFGHDRGDDLLENAA
GILKKVCRQEDIIGRWGGDEFVILLPQTSYTNAQQVLSRIHNECKRYELQTFALGVATKTSKEQSIKQVFKRAEERMYKN
KLQESSKAKSDIITSLINTLLDKSDECSDHLKRVTELAQEMGRALKLSKQELERLADLAYVHDIGKVVIPEEIFNKSEKL
TNEDWIKIKAHPEIGQRIARSTENLVHIAEEIGTHHERWDGQGYPSGLKGEEIPLLARIISIVDAYDVMTRGRIYQAAIS
SEKALKEIEQKAGTQFDPHLAEVFINEVNPNN

Specific function: Unknown

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=30.0518134715026, Blast_Score=97, Evalue=6e-21,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=32.2981366459627, Blast_Score=89, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=30.7228915662651, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=183, Percent_Identity=26.2295081967213, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=33.7748344370861, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1788381, Length=148, Percent_Identity=28.3783783783784, Blast_Score=73, Evalue=9e-14,
Organism=Escherichia coli, GI145693134, Length=125, Percent_Identity=32, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1787262, Length=149, Percent_Identity=26.1744966442953, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 106071; Mature: 106071

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNERLNNQKSEQEFMKSLSRLAEKNYQMPLGTVDYQFITDELYYLSGARAVILNTYEKD
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
NEKSITRAASGSKEVLTKACEILNTKLIGQKWDVNFKRLENMQNGSQQAWQLEEYHSLQE
CHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
IASGIISKEKSQLLEKELDLGTAYGIIIFYNNRVIGDILFAMPKDARIYNSEKIELYVKN
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCCCCEEECCCEEEEEEEE
VGITLMRTEAEKSLKENWDLLDGVFESIQDGISVLNNDLTIRYTNRIIAEWHYKNYPFNG
CCEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCC
KKCYHAYHDRDKPCDRCPSIRALETGEMEQEEITVTTDVGGKWLELYSYPLFENGSDHPT
CCHHHHHCCCCCCHHHCCCCEEECCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCH
GVVEFVRDITDRKHSTEKLRKNKQYFEHILDSTYDPLCVLNRDLEIVSLNKHYRDILAEY
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCHHHHHHHHHH
TGKSLCQRDLVGKDLFSMQDFLPDFLKDECHQVFNNGTPLIKEEKFKINGEQYYVEVTKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEECCCEEEEEEECC
PVFGDNGKVKFVIIVVRDITELKKKELQLKESERKFRQLAENIDHVFWMRSKDNQKVIYV
CCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEE
NPAYETVWKRPRQELYQRADAFIKYVHPDDKYHVKQEYKEFLQTGIFNSEYRIVRPDGEV
CCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCE
RWIWSRSNPVMDENGRVIRYAGLAVDITERKQAEEKIRYLSFYDRVTGLYNRAYLEEEIE
EEEEECCCCCCCCCCCEEEEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDVERQLPISIIIADVNGLKLINDTFGHDRGDDLLENAAGILKKVCRQEDIIGRWGGDE
HHCCCCCCCEEEEEECCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE
FVILLPQTSYTNAQQVLSRIHNECKRYELQTFALGVATKTSKEQSIKQVFKRAEERMYKN
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHCCCHHHHHHHHHHHHHHHHHHHH
KLQESSKAKSDIITSLINTLLDKSDECSDHLKRVTELAQEMGRALKLSKQELERLADLAY
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VHDIGKVVIPEEIFNKSEKLTNEDWIKIKAHPEIGQRIARSTENLVHIAEEIGTHHERWD
HHHHCCEECCHHHHCCHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
GQGYPSGLKGEEIPLLARIISIVDAYDVMTRGRIYQAAISSEKALKEIEQKAGTQFDPHL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AEVFINEVNPNN
HHHHHHCCCCCC
>Mature Secondary Structure
MDNERLNNQKSEQEFMKSLSRLAEKNYQMPLGTVDYQFITDELYYLSGARAVILNTYEKD
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
NEKSITRAASGSKEVLTKACEILNTKLIGQKWDVNFKRLENMQNGSQQAWQLEEYHSLQE
CHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
IASGIISKEKSQLLEKELDLGTAYGIIIFYNNRVIGDILFAMPKDARIYNSEKIELYVKN
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCCCCEEECCCEEEEEEEE
VGITLMRTEAEKSLKENWDLLDGVFESIQDGISVLNNDLTIRYTNRIIAEWHYKNYPFNG
CCEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCC
KKCYHAYHDRDKPCDRCPSIRALETGEMEQEEITVTTDVGGKWLELYSYPLFENGSDHPT
CCHHHHHCCCCCCHHHCCCCEEECCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCH
GVVEFVRDITDRKHSTEKLRKNKQYFEHILDSTYDPLCVLNRDLEIVSLNKHYRDILAEY
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCHHHHHHHHHH
TGKSLCQRDLVGKDLFSMQDFLPDFLKDECHQVFNNGTPLIKEEKFKINGEQYYVEVTKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEECCCEEEEEEECC
PVFGDNGKVKFVIIVVRDITELKKKELQLKESERKFRQLAENIDHVFWMRSKDNQKVIYV
CCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEE
NPAYETVWKRPRQELYQRADAFIKYVHPDDKYHVKQEYKEFLQTGIFNSEYRIVRPDGEV
CCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCE
RWIWSRSNPVMDENGRVIRYAGLAVDITERKQAEEKIRYLSFYDRVTGLYNRAYLEEEIE
EEEEECCCCCCCCCCCEEEEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDVERQLPISIIIADVNGLKLINDTFGHDRGDDLLENAAGILKKVCRQEDIIGRWGGDE
HHCCCCCCCEEEEEECCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE
FVILLPQTSYTNAQQVLSRIHNECKRYELQTFALGVATKTSKEQSIKQVFKRAEERMYKN
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHCCCHHHHHHHHHHHHHHHHHHHH
KLQESSKAKSDIITSLINTLLDKSDECSDHLKRVTELAQEMGRALKLSKQELERLADLAY
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VHDIGKVVIPEEIFNKSEKLTNEDWIKIKAHPEIGQRIARSTENLVHIAEEIGTHHERWD
HHHHCCEECCHHHHCCHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
GQGYPSGLKGEEIPLLARIISIVDAYDVMTRGRIYQAAISSEKALKEIEQKAGTQFDPHL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AEVFINEVNPNN
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]