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The map label for this gene is yxkH [H]

Identifier: 188586989

GI number: 188586989

Start: 2543346

End: 2544356

Strand: Reverse

Name: yxkH [H]

Synonym: Nther_2381

Alternate gene names: 188586989

Gene position: 2544356-2543346 (Counterclockwise)

Preceding gene: 188586990

Following gene: 188586988

Centisome position: 80.38

GC content: 39.47

Gene sequence:

>1011_bases
TTGTTGCAGTATGACAGTAATAGACATGCTCTAGGTTCTGATTTGGTTTTTAAGTGGATCTTAATAGGGATTTTAGTTGT
TGCCATGAGTGGGGCTTTGTTGTTTCAGGGTTGTAACCATGACACACAGGCTCCTTTATCAGAAGATAAAGAAAACCAAG
CTCAAGAAGAGTCAGAGCAAGTTAAGGACTCAAAGCAAATTGAGGAATCAGAACAGGATGAGCAATCTGATCAAAATACA
CATGAGCAATCGGATCAGGATACGAATAAGCCATCTGACCAAGATACTAAAATACCTGTCTTAATGTATCATCATTTTGA
TGATGACCCCGAGACTAGTGCAACCATTACTCCGGATATGCTGGAAAAACAGATGGAATTTCTAGATAAACACGGATTTT
CTGCCATTAGTATGGAAGATTTACTTAGATTTATTGAAGATGGCGATGATAACCACCTTCCTGACCGTCCTGTACTAATC
ACAATTGATGACGGTTATGCCAGTACTTATGAACAGGCAATACCTATACTGGAGGAGTATGGTTTTAACTCATATATATT
TATGATTACCGAGAGAATTGGTAAGCAGGTAGGTGAGTATGACTTTTTGTCCAAAGAAAAGCTCAAAGATCTTGAAGATC
AGGGACACTCTATCGAAAGCCATTCAGTTTCCCACGATCCTTTCACTGATCAAAAGGAAGGGGAAAGTACTTCGGAATGG
CGGGAGAGAATTGGGTATGAACTGGAAAAATCGAAACAGGTCTTGGAGGACAAGCTGAATAAAGAAATTCGATACTTTGC
CTATCCTTTTGGAGACTGGAACAGTCATACAGAGGAGCTAGTAGAAAAAGCAGGTTATGAGGCCACTTTTCTCGTTCGGG
AAGATTATGTCACAAAAGAGTCTCATCCTCAACGGCTTTTTCGATTTGGAATTACTAAAGACATGACCATGGAAGAATTT
AAAGAGATATTTGAACCTGTTTTGAATGAGGAGGAACCGGACCATGATTAA

Upstream 100 bases:

>100_bases
AAGGCCCGGACTAATCTAGGATTTCAAGCACAACATTCCTTGGAGTCAGGATTAATAAAAACTGTCAAGGAAGAAGATGT
TTGATGGAAGGAGGTATCCC

Downstream 100 bases:

>100_bases
AAATAAGGACATAATTTACTTTAGTGCTGTAGACTGGGATTACGTATTTGCCAGGCCTCAACAGACTGTTATGCGGTTAG
CACAAAATAACCGGGTGATT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLQYDSNRHALGSDLVFKWILIGILVVAMSGALLFQGCNHDTQAPLSEDKENQAQEESEQVKDSKQIEESEQDEQSDQNT
HEQSDQDTNKPSDQDTKIPVLMYHHFDDDPETSATITPDMLEKQMEFLDKHGFSAISMEDLLRFIEDGDDNHLPDRPVLI
TIDDGYASTYEQAIPILEEYGFNSYIFMITERIGKQVGEYDFLSKEKLKDLEDQGHSIESHSVSHDPFTDQKEGESTSEW
RERIGYELEKSKQVLEDKLNKEIRYFAYPFGDWNSHTEELVEKAGYEATFLVREDYVTKESHPQRLFRFGITKDMTMEEF
KEIFEPVLNEEEPDHD

Sequences:

>Translated_336_residues
MLQYDSNRHALGSDLVFKWILIGILVVAMSGALLFQGCNHDTQAPLSEDKENQAQEESEQVKDSKQIEESEQDEQSDQNT
HEQSDQDTNKPSDQDTKIPVLMYHHFDDDPETSATITPDMLEKQMEFLDKHGFSAISMEDLLRFIEDGDDNHLPDRPVLI
TIDDGYASTYEQAIPILEEYGFNSYIFMITERIGKQVGEYDFLSKEKLKDLEDQGHSIESHSVSHDPFTDQKEGESTSEW
RERIGYELEKSKQVLEDKLNKEIRYFAYPFGDWNSHTEELVEKAGYEATFLVREDYVTKESHPQRLFRFGITKDMTMEEF
KEIFEPVLNEEEPDHD
>Mature_336_residues
MLQYDSNRHALGSDLVFKWILIGILVVAMSGALLFQGCNHDTQAPLSEDKENQAQEESEQVKDSKQIEESEQDEQSDQNT
HEQSDQDTNKPSDQDTKIPVLMYHHFDDDPETSATITPDMLEKQMEFLDKHGFSAISMEDLLRFIEDGDDNHLPDRPVLI
TIDDGYASTYEQAIPILEEYGFNSYIFMITERIGKQVGEYDFLSKEKLKDLEDQGHSIESHSVSHDPFTDQKEGESTSEW
RERIGYELEKSKQVLEDKLNKEIRYFAYPFGDWNSHTEELVEKAGYEATFLVREDYVTKESHPQRLFRFGITKDMTMEEF
KEIFEPVLNEEEPDHD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=244, Percent_Identity=26.2295081967213, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 39073; Mature: 39073

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQYDSNRHALGSDLVFKWILIGILVVAMSGALLFQGCNHDTQAPLSEDKENQAQEESEQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHH
VKDSKQIEESEQDEQSDQNTHEQSDQDTNKPSDQDTKIPVLMYHHFDDDPETSATITPDM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHH
LEKQMEFLDKHGFSAISMEDLLRFIEDGDDNHLPDRPVLITIDDGYASTYEQAIPILEEY
HHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC
GFNSYIFMITERIGKQVGEYDFLSKEKLKDLEDQGHSIESHSVSHDPFTDQKEGESTSEW
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
RERIGYELEKSKQVLEDKLNKEIRYFAYPFGDWNSHTEELVEKAGYEATFLVREDYVTKE
HHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC
SHPQRLFRFGITKDMTMEEFKEIFEPVLNEEEPDHD
CCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLQYDSNRHALGSDLVFKWILIGILVVAMSGALLFQGCNHDTQAPLSEDKENQAQEESEQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHH
VKDSKQIEESEQDEQSDQNTHEQSDQDTNKPSDQDTKIPVLMYHHFDDDPETSATITPDM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHH
LEKQMEFLDKHGFSAISMEDLLRFIEDGDDNHLPDRPVLITIDDGYASTYEQAIPILEEY
HHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC
GFNSYIFMITERIGKQVGEYDFLSKEKLKDLEDQGHSIESHSVSHDPFTDQKEGESTSEW
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
RERIGYELEKSKQVLEDKLNKEIRYFAYPFGDWNSHTEELVEKAGYEATFLVREDYVTKE
HHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC
SHPQRLFRFGITKDMTMEEFKEIFEPVLNEEEPDHD
CCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]