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The map label for this gene is ydaM [C]

Identifier: 188586796

GI number: 188586796

Start: 2319138

End: 2320919

Strand: Reverse

Name: ydaM [C]

Synonym: Nther_2187

Alternate gene names: 188586796

Gene position: 2320919-2319138 (Counterclockwise)

Preceding gene: 188586797

Following gene: 188586795

Centisome position: 73.32

GC content: 31.99

Gene sequence:

>1782_bases
ATGTCAGCTAATTCAAATAATAATCACAATCAAATAAAAGGAATATTAAATTCTTTAAGTGCTAATATTTGTCTCTTGGA
TGAAAATGGAGTCATAGAACAGGTTAATGATTCCTGGTTAAATTTTGCCAAGCGTAATAATGGTGATTTAAAAAAAAATG
GCCAAGGAATAAATTATTTATCCGTGTGTTATAAAGCTGTTGAAAATGGCTGCGAAAGTGCCAGTTTTTTTATTGATGGC
CTTTGTTCTGTGATGAACAATGAAAGGGATTATTTTGAATTTGAATATCCCTGTCATTCACCGGATGTAGAACGATGGTT
TATCTGTCGAGTAACTCCTTATTATGAAACAATTTATACTTCATTAAAACGCAAAGTAGTAGTTGCTCATGAAGATATTA
CAAAAAGAAAACAGGCAGAAAAATGGTTAGAATCCTTGTATAAAAATTCCTCAGATGGAGTTATACAAGTAGATAATGAG
AATAAAGTTATAGATATTAATGAAAAATTCCATGAATTATTTGGATATTGTATTTATGAAATTAAATGGAAAAATATATT
TGATGTATTAAAAATTGACATAGCGAATAAAGAGCAAACCAGTCATGGAGAAACTAATATTACTGCGGAAATAACTTGTT
ATAGTAAAACAGATAAACCGGTAGATGTGTTACTTAAAATAATTCCAGTTCAAATAAAAGAGGAGTTAGTAGGGAATTAT
GTGATCTTCAATGATATAACTGAACGTAAAAAGAAAGAAGAAGAAATTCGGTATTTAAGCATCCATGATAGTTTAACAAG
CCTCTATAATCGCGCTTATTTAGAAAAAGAATTAACACGACTTGATGTAAAAACACAACTTCCAATCAGTATAATTATAG
CGGATGTAAATGGTTTAAAATTAATCAATGACACATATGGTCATCAAGTTGGGGACAGGGCCTTGAAGCGTGTAGCTGAT
GCTTTAAGAAAAGCTTGTAGAAAAGAAGATATTATTTCTCGGTGGGGTGGAGATGAGTTTGTCATACTGTTACCAAAAAC
AAATAAACAAGCTGCTAATCAAATAGCGGAAAGGATTAGAGAAGTAAGTGAAAATATTGTTAAAAAATCAATTAAGGTAA
ACTTTGCAGTAGGTACAGCCACAAAAGAAAACATAGATAAACCCTTTAAAGAAATTTTCAAAGAAGCAGAAGATTCAATG
TATAAGAATAAATTAGTTGAAGATTCGAGTGTCAGAAATGACATTATATCTATCTTATTAGGAACATTAAAAGAAAATAG
TGGTGAAACAGAGGAACATGCTAAGAGAATGAGAGATCTATGTTATGAATTTGGAAAAGCTTTGGGTTTAGATGAAGATG
AATTATGCAGACTGTCCCTATTGGCGACAATGCACGATATAGGTAAAGTAATTATATCATCTGATATATTAAAAAAACGT
GGACCATTGACAGAAAAAGAATGGCATCTTATTAAAAAACATCCTGAAGTTGGCAAACGTATAGCTTTAAACTCAAACAA
TTTATGTCACATTGCTGAGGAGATTAATTCTCACCATGAAAGATGGGATGGCGACGGCTATCCCAATGGATTAAAGGGTG
AAGAGATTCCGTTACTGGCAAGGATATTATTGATCGTTGATGCTTATGATGCTATGACTCATGGTAGGACCTATAAAAAA
CCTGTTTCCCAACAAACAGCACTATCAGAAATTAAAAGATGTGCTGGAACTCAATTCGATCCTGGTTTGGTAGAAGTTTT
TTTGAAGATCATGACACGCTGA

Upstream 100 bases:

>100_bases
AGAATATAAAAATTAACCAAAAGTTAAAAATGTCAATTTGAGATTATAAGTTAATTAGTAAAATACAAAAAAAATCCTTT
TAAGTTAAGGGGGTTACTAC

Downstream 100 bases:

>100_bases
TATTGTGATCAAGAAATTGATATTTACAGTCAAATAATTTTAAACTGACAGTTTATCCTTGACAAGGGCAAACCTATCGT
GAGGTAGGGGCGCAAAGCTA

Product: diguanylate cyclase and metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 592

Protein sequence:

>593_residues
MSANSNNNHNQIKGILNSLSANICLLDENGVIEQVNDSWLNFAKRNNGDLKKNGQGINYLSVCYKAVENGCESASFFIDG
LCSVMNNERDYFEFEYPCHSPDVERWFICRVTPYYETIYTSLKRKVVVAHEDITKRKQAEKWLESLYKNSSDGVIQVDNE
NKVIDINEKFHELFGYCIYEIKWKNIFDVLKIDIANKEQTSHGETNITAEITCYSKTDKPVDVLLKIIPVQIKEELVGNY
VIFNDITERKKKEEEIRYLSIHDSLTSLYNRAYLEKELTRLDVKTQLPISIIIADVNGLKLINDTYGHQVGDRALKRVAD
ALRKACRKEDIISRWGGDEFVILLPKTNKQAANQIAERIREVSENIVKKSIKVNFAVGTATKENIDKPFKEIFKEAEDSM
YKNKLVEDSSVRNDIISILLGTLKENSGETEEHAKRMRDLCYEFGKALGLDEDELCRLSLLATMHDIGKVIISSDILKKR
GPLTEKEWHLIKKHPEVGKRIALNSNNLCHIAEEINSHHERWDGDGYPNGLKGEEIPLLARILLIVDAYDAMTHGRTYKK
PVSQQTALSEIKRCAGTQFDPGLVEVFLKIMTR

Sequences:

>Translated_593_residues
MSANSNNNHNQIKGILNSLSANICLLDENGVIEQVNDSWLNFAKRNNGDLKKNGQGINYLSVCYKAVENGCESASFFIDG
LCSVMNNERDYFEFEYPCHSPDVERWFICRVTPYYETIYTSLKRKVVVAHEDITKRKQAEKWLESLYKNSSDGVIQVDNE
NKVIDINEKFHELFGYCIYEIKWKNIFDVLKIDIANKEQTSHGETNITAEITCYSKTDKPVDVLLKIIPVQIKEELVGNY
VIFNDITERKKKEEEIRYLSIHDSLTSLYNRAYLEKELTRLDVKTQLPISIIIADVNGLKLINDTYGHQVGDRALKRVAD
ALRKACRKEDIISRWGGDEFVILLPKTNKQAANQIAERIREVSENIVKKSIKVNFAVGTATKENIDKPFKEIFKEAEDSM
YKNKLVEDSSVRNDIISILLGTLKENSGETEEHAKRMRDLCYEFGKALGLDEDELCRLSLLATMHDIGKVIISSDILKKR
GPLTEKEWHLIKKHPEVGKRIALNSNNLCHIAEEINSHHERWDGDGYPNGLKGEEIPLLARILLIVDAYDAMTHGRTYKK
PVSQQTALSEIKRCAGTQFDPGLVEVFLKIMTR
>Mature_592_residues
SANSNNNHNQIKGILNSLSANICLLDENGVIEQVNDSWLNFAKRNNGDLKKNGQGINYLSVCYKAVENGCESASFFIDGL
CSVMNNERDYFEFEYPCHSPDVERWFICRVTPYYETIYTSLKRKVVVAHEDITKRKQAEKWLESLYKNSSDGVIQVDNEN
KVIDINEKFHELFGYCIYEIKWKNIFDVLKIDIANKEQTSHGETNITAEITCYSKTDKPVDVLLKIIPVQIKEELVGNYV
IFNDITERKKKEEEIRYLSIHDSLTSLYNRAYLEKELTRLDVKTQLPISIIIADVNGLKLINDTYGHQVGDRALKRVADA
LRKACRKEDIISRWGGDEFVILLPKTNKQAANQIAERIREVSENIVKKSIKVNFAVGTATKENIDKPFKEIFKEAEDSMY
KNKLVEDSSVRNDIISILLGTLKENSGETEEHAKRMRDLCYEFGKALGLDEDELCRLSLLATMHDIGKVIISSDILKKRG
PLTEKEWHLIKKHPEVGKRIALNSNNLCHIAEEINSHHERWDGDGYPNGLKGEEIPLLARILLIVDAYDAMTHGRTYKKP
VSQQTALSEIKRCAGTQFDPGLVEVFLKIMTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=35.7142857142857, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=32.5842696629214, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=150, Percent_Identity=36, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788381, Length=220, Percent_Identity=27.7272727272727, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081974, Length=148, Percent_Identity=38.5135135135135, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1786584, Length=207, Percent_Identity=27.0531400966184, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=32.7272727272727, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1788085, Length=130, Percent_Identity=33.8461538461538, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787541, Length=165, Percent_Identity=27.8787878787879, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787802, Length=151, Percent_Identity=26.4900662251656, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787816, Length=146, Percent_Identity=28.7671232876712, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67846; Mature: 67715

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANSNNNHNQIKGILNSLSANICLLDENGVIEQVNDSWLNFAKRNNGDLKKNGQGINYL
CCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
SVCYKAVENGCESASFFIDGLCSVMNNERDYFEFEYPCHSPDVERWFICRVTPYYETIYT
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEECHHHHHHHH
SLKRKVVVAHEDITKRKQAEKWLESLYKNSSDGVIQVDNENKVIDINEKFHELFGYCIYE
HHHHEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEECCHHHHHHHHHHHEE
IKWKNIFDVLKIDIANKEQTSHGETNITAEITCYSKTDKPVDVLLKIIPVQIKEELVGNY
EEHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCE
VIFNDITERKKKEEEIRYLSIHDSLTSLYNRAYLEKELTRLDVKTQLPISIIIADVNGLK
EEECCHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCE
LINDTYGHQVGDRALKRVADALRKACRKEDIISRWGGDEFVILLPKTNKQAANQIAERIR
EECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHH
EVSENIVKKSIKVNFAVGTATKENIDKPFKEIFKEAEDSMYKNKLVEDSSVRNDIISILL
HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GTLKENSGETEEHAKRMRDLCYEFGKALGLDEDELCRLSLLATMHDIGKVIISSDILKKR
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GPLTEKEWHLIKKHPEVGKRIALNSNNLCHIAEEINSHHERWDGDGYPNGLKGEEIPLLA
CCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
RILLIVDAYDAMTHGRTYKKPVSQQTALSEIKRCAGTQFDPGLVEVFLKIMTR
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SANSNNNHNQIKGILNSLSANICLLDENGVIEQVNDSWLNFAKRNNGDLKKNGQGINYL
CCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
SVCYKAVENGCESASFFIDGLCSVMNNERDYFEFEYPCHSPDVERWFICRVTPYYETIYT
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEECHHHHHHHH
SLKRKVVVAHEDITKRKQAEKWLESLYKNSSDGVIQVDNENKVIDINEKFHELFGYCIYE
HHHHEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEECCHHHHHHHHHHHEE
IKWKNIFDVLKIDIANKEQTSHGETNITAEITCYSKTDKPVDVLLKIIPVQIKEELVGNY
EEHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCE
VIFNDITERKKKEEEIRYLSIHDSLTSLYNRAYLEKELTRLDVKTQLPISIIIADVNGLK
EEECCHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCE
LINDTYGHQVGDRALKRVADALRKACRKEDIISRWGGDEFVILLPKTNKQAANQIAERIR
EECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHH
EVSENIVKKSIKVNFAVGTATKENIDKPFKEIFKEAEDSMYKNKLVEDSSVRNDIISILL
HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GTLKENSGETEEHAKRMRDLCYEFGKALGLDEDELCRLSLLATMHDIGKVIISSDILKKR
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GPLTEKEWHLIKKHPEVGKRIALNSNNLCHIAEEINSHHERWDGDGYPNGLKGEEIPLLA
CCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
RILLIVDAYDAMTHGRTYKKPVSQQTALSEIKRCAGTQFDPGLVEVFLKIMTR
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]