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The map label for this gene is yhcS [H]

Identifier: 188586726

GI number: 188586726

Start: 2237435

End: 2238244

Strand: Reverse

Name: yhcS [H]

Synonym: Nther_2116

Alternate gene names: 188586726

Gene position: 2238244-2237435 (Counterclockwise)

Preceding gene: 188586727

Following gene: 188586725

Centisome position: 70.71

GC content: 37.53

Gene sequence:

>810_bases
GTGACAGACAAAGTTAAAAATCAGTTACAACACTATAAAACCAAACTATTGAAATTAAATAATTCAATAAAAGCTCATAA
ACAAAACATTGAAACCCGTACTGTAGTTGGGATCGTACTAGTGCTGGTCGGGGTGTCCCTGGCCAGCTTTCCTTATTTAC
AAAATATCTACTATCAAAGAATCCAAGAAAAGCAAGTGGCTGAAAAACTAGAAGAATTGGAACAGGACACACAAGTATTA
AATTCTTCAAGGAAAAAACTCGGATATCGAGATATTGAAATAGCCCAAAGTGAATTAAATGATCCTGAAGAGGATCCAAA
AAATGAAAATCCTTCTTTACAATCCGATGAAGATAAAAGTGAGGAAGAAGAATTTGCCTTTGAATTGGAACCTGCCGATG
GATTAATAGAAATACCTAAAATTGACCTTCAGTTAGCAGTGGGTTTTGGTGTAGAACTATCTGATTTAGCACATGGACCA
GGTTTTTATCCAGAAAGTGGTCGACCCGAGACGGGGAACCTCTCCATAGCTGGTCACAGAACTACTTATGGGGGACCTTT
TCGGCACTTAAATGAATTAGACCAAGGTGATTCTATCAGAGTTTATCGTGAAGGAAAAAAATATCGTTATGAAGTTGATC
GCGTTTTTGATACTCATAGTAGTGATTGGAGTGTTATTCGTCCAACAGATGATCCTGCATTAACTTTAACTACTTGTCAC
CCACCGGGATCTGATGAGAGAAGACTGATCGTAAGGGCGTATTTAACTAAAGAAAAAGATCAGACAGACACAGAACAGAC
AGAGAAATAA

Upstream 100 bases:

>100_bases
CTGGTGGTGCTTGGTTAGTTATTAGTAGAAGGAAATAACCTATAACCCGTTTTATTCTTCATTTTCCTTTTAACACAAAT
CTACACGAGGGTGAAATGCT

Downstream 100 bases:

>100_bases
TAAATTAACTAAGATAATAAGATGAACTAAGCTTAATATATAAGATAATGGAGGCTTATCTCATGTCCAACTCTATTAAT
AAATCAAAACGAATTAAAGA

Product: sortase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTDKVKNQLQHYKTKLLKLNNSIKAHKQNIETRTVVGIVLVLVGVSLASFPYLQNIYYQRIQEKQVAEKLEELEQDTQVL
NSSRKKLGYRDIEIAQSELNDPEEDPKNENPSLQSDEDKSEEEEFAFELEPADGLIEIPKIDLQLAVGFGVELSDLAHGP
GFYPESGRPETGNLSIAGHRTTYGGPFRHLNELDQGDSIRVYREGKKYRYEVDRVFDTHSSDWSVIRPTDDPALTLTTCH
PPGSDERRLIVRAYLTKEKDQTDTEQTEK

Sequences:

>Translated_269_residues
MTDKVKNQLQHYKTKLLKLNNSIKAHKQNIETRTVVGIVLVLVGVSLASFPYLQNIYYQRIQEKQVAEKLEELEQDTQVL
NSSRKKLGYRDIEIAQSELNDPEEDPKNENPSLQSDEDKSEEEEFAFELEPADGLIEIPKIDLQLAVGFGVELSDLAHGP
GFYPESGRPETGNLSIAGHRTTYGGPFRHLNELDQGDSIRVYREGKKYRYEVDRVFDTHSSDWSVIRPTDDPALTLTTCH
PPGSDERRLIVRAYLTKEKDQTDTEQTEK
>Mature_268_residues
TDKVKNQLQHYKTKLLKLNNSIKAHKQNIETRTVVGIVLVLVGVSLASFPYLQNIYYQRIQEKQVAEKLEELEQDTQVLN
SSRKKLGYRDIEIAQSELNDPEEDPKNENPSLQSDEDKSEEEEFAFELEPADGLIEIPKIDLQLAVGFGVELSDLAHGPG
FYPESGRPETGNLSIAGHRTTYGGPFRHLNELDQGDSIRVYREGKKYRYEVDRVFDTHSSDWSVIRPTDDPALTLTTCHP
PGSDERRLIVRAYLTKEKDQTDTEQTEK

Specific function: Unknown

COG id: COG3764

COG function: function code M; Sortase (surface protein transpeptidase)

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005754 [H]

Pfam domain/function: PF04203 Sortase [H]

EC number: NA

Molecular weight: Translated: 30704; Mature: 30573

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKVKNQLQHYKTKLLKLNNSIKAHKQNIETRTVVGIVLVLVGVSLASFPYLQNIYYQR
CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQEKQVAEKLEELEQDTQVLNSSRKKLGYRDIEIAQSELNDPEEDPKNENPSLQSDEDKS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
EEEEFAFELEPADGLIEIPKIDLQLAVGFGVELSDLAHGPGFYPESGRPETGNLSIAGHR
CHHHEEEEECCCCCEEECCCEEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEEEECC
TTYGGPFRHLNELDQGDSIRVYREGKKYRYEVDRVFDTHSSDWSVIRPTDDPALTLTTCH
CCCCCHHHHHHHCCCCCCEEEEECCCCCEEHHHHHHCCCCCCCCEECCCCCCEEEEEECC
PPGSDERRLIVRAYLTKEKDQTDTEQTEK
CCCCCCCEEEEHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure 
TDKVKNQLQHYKTKLLKLNNSIKAHKQNIETRTVVGIVLVLVGVSLASFPYLQNIYYQR
CHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQEKQVAEKLEELEQDTQVLNSSRKKLGYRDIEIAQSELNDPEEDPKNENPSLQSDEDKS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
EEEEFAFELEPADGLIEIPKIDLQLAVGFGVELSDLAHGPGFYPESGRPETGNLSIAGHR
CHHHEEEEECCCCCEEECCCEEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEEEECC
TTYGGPFRHLNELDQGDSIRVYREGKKYRYEVDRVFDTHSSDWSVIRPTDDPALTLTTCH
CCCCCHHHHHHHCCCCCCEEEEECCCCCEEHHHHHHCCCCCCCCEECCCCCCEEEEEECC
PPGSDERRLIVRAYLTKEKDQTDTEQTEK
CCCCCCCEEEEHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]