Click here to switch to the map view.

The map label for this gene is yjcR [C]

Identifier: 188586692

GI number: 188586692

Start: 2201904

End: 2203154

Strand: Reverse

Name: yjcR [C]

Synonym: Nther_2082

Alternate gene names: 188586692

Gene position: 2203154-2201904 (Counterclockwise)

Preceding gene: 188586693

Following gene: 188586691

Centisome position: 69.6

GC content: 37.65

Gene sequence:

>1251_bases
ATGAAAAAGAAGTGGAAAATTCTTTTTGGAGTTTTGATATTGGTAGCTGCTGCCAGCTTTATTACAGTTCAAGCCACAGG
AAGTATAACAGTTAATGTTAAAGAGATTAGCCCCGAAGAAATTAAACACAGTTTTACAGAAGAAGGAACTGTTGAACCTG
CAGAGGATCGTAATGTTATCACAATGCATACTGCAAAAATCGATAAAGTTCATGTGGAAGATGGGGACCACGTAAAGCAG
GGTGAGTTATTGGTTGAACTGAATCCGCGTGAACTCAACTATACTATAGAGGAACTAAGGGCTCAAGTTAGAGCCTTAGA
AGGTGAAAGACAGCAATTAGAACAAGAACCGGGAGAAGCTGAAATTGAGAATATAGAAATAGGGATTGAACATGCAAAGG
ATACCTTGAAAAACGCTGAAACCAGATATGAAAAGATCAAAGAAATGTACAGAAATGACTTTGCAACCGAAAGTGAGCTA
AAAGAGGCTGAAGATATGGTAAAACAGGCAGAATTAAATTTAAATCAGCAAAAGAAATCTTTAGAGATCTTAGATGAATC
CTTTAGCCCACCTGAAGGTAGCTACGAAGTAATTGATGCCCAAAAAAGTGCCTTGGAATCACAAATAGAATTTTTAAAGG
AACAAAAAGAAGAGTATCAAATGCATGCCCCTATTCAGGGGATAGTCACTGATCTACAGGTAGAAGAGATGGGACTTGCA
AATCCTGAAAGACCTCTAATGAAGATAAGGGGAAATGATAAATTACAAATAGAAACAAGAGTATTAACTAGAGACGTTTA
TGAAATAGAGGAAAGTATGGAGGTTTCACTTGTTTTTGAGCGAAGGGAAAAGGATGTAGAATTTACAGGAGAAATTTCCG
AAATTGCACCTTATGCCGAAGCCAGCTTATCAGAACTTGGATTGGAAGAGGAGAGGGTGCCAGTGACAATTACTCCGGAA
ATTCCTGAAGATATAGATCTGGGCCCGGGTTACAAAGTTGATGTAGAATTTATCACAGAAAAACAAACTGATCAATTGGT
GGTTCCTAAAAGTGCGTTATTTACCCATGAAGGCCAAGATGCTGTGTTTACAGTAGAAAATGACAGAGCCAAGATACAGA
AAGTGAATACGGGTTTGGAAACTAATCAGAAGGTGGCTATCAAAGATGGCTTGGAAGACGGAGATAAAGTTATTTTAAAC
CCTGATAAAGAAGACTTACAAGAAGGAACTAGAATAAATATTCAGACTTAA

Upstream 100 bases:

>100_bases
CAGAGATTTGCCTTGAGGAAGGTGAGAAATCTGAGTTTAGTAGATGTGTTGAAATCCAGAGAGTGATACAGTCTTACTGT
TTGAGAGGGGGAGAGGAGTA

Downstream 100 bases:

>100_bases
GACCGAGATGAATCCCGACTGGCGCATGTGTAACGTCAGCGGGATTTATTTTATTATAAGGATGTGTAAAAATTGATGCA
CAGCGCCTACTATAAAAGTG

Product: efflux transporter, RND family, MFP subunit

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD; Efflux Transporter; Efflux Transporter Rnd Family Mfp Subunit; Membrane-Associated Protein; Multidrug Resistance Efflux Pump-Like Protein; Efflux Transporter MFP Component RND Family Protein; Periplasmic Component Of Efflux System; Membrane Fusion Protein; Hlyd Family Secretion Protein; Multidrug Resistance Protein; Efflux System

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MKKKWKILFGVLILVAAASFITVQATGSITVNVKEISPEEIKHSFTEEGTVEPAEDRNVITMHTAKIDKVHVEDGDHVKQ
GELLVELNPRELNYTIEELRAQVRALEGERQQLEQEPGEAEIENIEIGIEHAKDTLKNAETRYEKIKEMYRNDFATESEL
KEAEDMVKQAELNLNQQKKSLEILDESFSPPEGSYEVIDAQKSALESQIEFLKEQKEEYQMHAPIQGIVTDLQVEEMGLA
NPERPLMKIRGNDKLQIETRVLTRDVYEIEESMEVSLVFERREKDVEFTGEISEIAPYAEASLSELGLEEERVPVTITPE
IPEDIDLGPGYKVDVEFITEKQTDQLVVPKSALFTHEGQDAVFTVENDRAKIQKVNTGLETNQKVAIKDGLEDGDKVILN
PDKEDLQEGTRINIQT

Sequences:

>Translated_416_residues
MKKKWKILFGVLILVAAASFITVQATGSITVNVKEISPEEIKHSFTEEGTVEPAEDRNVITMHTAKIDKVHVEDGDHVKQ
GELLVELNPRELNYTIEELRAQVRALEGERQQLEQEPGEAEIENIEIGIEHAKDTLKNAETRYEKIKEMYRNDFATESEL
KEAEDMVKQAELNLNQQKKSLEILDESFSPPEGSYEVIDAQKSALESQIEFLKEQKEEYQMHAPIQGIVTDLQVEEMGLA
NPERPLMKIRGNDKLQIETRVLTRDVYEIEESMEVSLVFERREKDVEFTGEISEIAPYAEASLSELGLEEERVPVTITPE
IPEDIDLGPGYKVDVEFITEKQTDQLVVPKSALFTHEGQDAVFTVENDRAKIQKVNTGLETNQKVAIKDGLEDGDKVILN
PDKEDLQEGTRINIQT
>Mature_416_residues
MKKKWKILFGVLILVAAASFITVQATGSITVNVKEISPEEIKHSFTEEGTVEPAEDRNVITMHTAKIDKVHVEDGDHVKQ
GELLVELNPRELNYTIEELRAQVRALEGERQQLEQEPGEAEIENIEIGIEHAKDTLKNAETRYEKIKEMYRNDFATESEL
KEAEDMVKQAELNLNQQKKSLEILDESFSPPEGSYEVIDAQKSALESQIEFLKEQKEEYQMHAPIQGIVTDLQVEEMGLA
NPERPLMKIRGNDKLQIETRVLTRDVYEIEESMEVSLVFERREKDVEFTGEISEIAPYAEASLSELGLEEERVPVTITPE
IPEDIDLGPGYKVDVEFITEKQTDQLVVPKSALFTHEGQDAVFTVENDRAKIQKVNTGLETNQKVAIKDGLEDGDKVILN
PDKEDLQEGTRINIQT

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47216; Mature: 47216

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKWKILFGVLILVAAASFITVQATGSITVNVKEISPEEIKHSFTEEGTVEPAEDRNVI
CCCHHHHHHHHHHHHHHHHEEEEEECCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCEE
TMHTAKIDKVHVEDGDHVKQGELLVELNPRELNYTIEELRAQVRALEGERQQLEQEPGEA
EEEECEEEEEEECCCCCEECCCEEEEECCHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCC
EIENIEIGIEHAKDTLKNAETRYEKIKEMYRNDFATESELKEAEDMVKQAELNLNQQKKS
EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
LEILDESFSPPEGSYEVIDAQKSALESQIEFLKEQKEEYQMHAPIQGIVTDLQVEEMGLA
HHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCCC
NPERPLMKIRGNDKLQIETRVLTRDVYEIEESMEVSLVFERREKDVEFTGEISEIAPYAE
CCCCCEEEECCCCEEEEEEHHHHHHHHHHHHCCEEEEEEECCCCCCEECCCHHHHCCHHH
ASLSELGLEEERVPVTITPEIPEDIDLGPGYKVDVEFITEKQTDQLVVPKSALFTHEGQD
HHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEECCCHHHEEECCCC
AVFTVENDRAKIQKVNTGLETNQKVAIKDGLEDGDKVILNPDKEDLQEGTRINIQT
EEEEEECCCHHHHHHCCCCCCCCEEEEECCCCCCCEEEECCCHHHHCCCCEEEEEC
>Mature Secondary Structure
MKKKWKILFGVLILVAAASFITVQATGSITVNVKEISPEEIKHSFTEEGTVEPAEDRNVI
CCCHHHHHHHHHHHHHHHHEEEEEECCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCEE
TMHTAKIDKVHVEDGDHVKQGELLVELNPRELNYTIEELRAQVRALEGERQQLEQEPGEA
EEEECEEEEEEECCCCCEECCCEEEEECCHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCC
EIENIEIGIEHAKDTLKNAETRYEKIKEMYRNDFATESELKEAEDMVKQAELNLNQQKKS
EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
LEILDESFSPPEGSYEVIDAQKSALESQIEFLKEQKEEYQMHAPIQGIVTDLQVEEMGLA
HHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCCC
NPERPLMKIRGNDKLQIETRVLTRDVYEIEESMEVSLVFERREKDVEFTGEISEIAPYAE
CCCCCEEEECCCCEEEEEEHHHHHHHHHHHHCCEEEEEEECCCCCCEECCCHHHHCCHHH
ASLSELGLEEERVPVTITPEIPEDIDLGPGYKVDVEFITEKQTDQLVVPKSALFTHEGQD
HHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEECCCHHHEEECCCC
AVFTVENDRAKIQKVNTGLETNQKVAIKDGLEDGDKVILNPDKEDLQEGTRINIQT
EEEEEECCCHHHHHHCCCCCCCCEEEEECCCCCCCEEEECCCHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA