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The map label for this gene is yddE [C]

Identifier: 188586680

GI number: 188586680

Start: 2190696

End: 2191523

Strand: Reverse

Name: yddE [C]

Synonym: Nther_2070

Alternate gene names: 188586680

Gene position: 2191523-2190696 (Counterclockwise)

Preceding gene: 188586681

Following gene: 188586678

Centisome position: 69.23

GC content: 36.84

Gene sequence:

>828_bases
TTGACTGGGTCTAATATTTATATTTTTCAGGTTGATGCTTTTACTAAAAAGCCTTTTTCAGGCAACCCCGCCGCTGTTTG
TATTACCGATAGTAAGATGGAAGAGGGATGGATGCAAAAAGTAGCTCAAGAAATGAATTTGTCAGAAACAGCTTTTTTAT
GGCCTTCTAATGATAAAAGTTTTAATTTAAAATGGTTCACCCCCACTACTGAAGTAGATCTCTGTGGTCATGCTACTCTA
GCTGCAGCTAAAATTTTGTTTTCTCAAAATTATTTATCACAATCAGAAAAAAATGAAATTACATTTAATACAAATAGTGG
CAAGCTGACGGCTAATTTAATAGACAATATGATTGAATTAGATTTTCCCATTGAACGGGAAGTGGCTCTAGAGGAGTATG
ATGAACTGATTAGGGCATTGAGAATTGGTTATTCATCAATTAAGTTTGTAGGAAAAAATCAGTTTGACTTTTTAGTGGAA
GTTGAATCTGAAGAGAAATTAGGCGAAATAGCTCCAGACCATAATAAATTAGCTGAACTGACAGAACGGGGGGTTATTGT
TACTAGTGCTAGCTCATTACCTTCTTATGACTTTGTGTCTAGATTTTTTGCACCTGCAGTAGGGGTAGCTGAGGATCCGG
TGACGGGATCAGCTCATTGCAATTTAGGTCCTTATTGGAAAGATCGTCTTCATAAAGATGAATTAATAGCTTATCAGGAT
TCAGATCGGGGTGGAGAGATAAAAGTAAAAGTTGATGAGCAAAATGATCGTGTGATCCTCGGTGGTCAGGCGGTTGTTGT
GTTTAAAGGCACTTTATTGTGCCAATAA

Upstream 100 bases:

>100_bases
CCTGGTAAACCTTATATGGCTTTAGATGATATAGTAAAAGGATTACTCCGAGCTATCAAGGTAACTTGTGAAGTCTAATA
AATTAAAGGAGGGTTTTGTT

Downstream 100 bases:

>100_bases
ACTCTTAATAAAAGACTGTGTTAAAGTTCAATTGTAACAATTCACAGTATCAATAACGTAAACATGATAATATAAAAAGT
GAGCTCTCCAAATTGAGGGA

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTGSNIYIFQVDAFTKKPFSGNPAAVCITDSKMEEGWMQKVAQEMNLSETAFLWPSNDKSFNLKWFTPTTEVDLCGHATL
AAAKILFSQNYLSQSEKNEITFNTNSGKLTANLIDNMIELDFPIEREVALEEYDELIRALRIGYSSIKFVGKNQFDFLVE
VESEEKLGEIAPDHNKLAELTERGVIVTSASSLPSYDFVSRFFAPAVGVAEDPVTGSAHCNLGPYWKDRLHKDELIAYQD
SDRGGEIKVKVDEQNDRVILGGQAVVVFKGTLLCQ

Sequences:

>Translated_275_residues
MTGSNIYIFQVDAFTKKPFSGNPAAVCITDSKMEEGWMQKVAQEMNLSETAFLWPSNDKSFNLKWFTPTTEVDLCGHATL
AAAKILFSQNYLSQSEKNEITFNTNSGKLTANLIDNMIELDFPIEREVALEEYDELIRALRIGYSSIKFVGKNQFDFLVE
VESEEKLGEIAPDHNKLAELTERGVIVTSASSLPSYDFVSRFFAPAVGVAEDPVTGSAHCNLGPYWKDRLHKDELIAYQD
SDRGGEIKVKVDEQNDRVILGGQAVVVFKGTLLCQ
>Mature_274_residues
TGSNIYIFQVDAFTKKPFSGNPAAVCITDSKMEEGWMQKVAQEMNLSETAFLWPSNDKSFNLKWFTPTTEVDLCGHATLA
AAKILFSQNYLSQSEKNEITFNTNSGKLTANLIDNMIELDFPIEREVALEEYDELIRALRIGYSSIKFVGKNQFDFLVEV
ESEEKLGEIAPDHNKLAELTERGVIVTSASSLPSYDFVSRFFAPAVGVAEDPVTGSAHCNLGPYWKDRLHKDELIAYQDS
DRGGEIKVKVDEQNDRVILGGQAVVVFKGTLLCQ

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=287, Percent_Identity=39.3728222996516, Blast_Score=177, Evalue=7e-45,
Organism=Homo sapiens, GI74316009, Length=257, Percent_Identity=38.5214007782101, Blast_Score=152, Evalue=2e-37,
Organism=Escherichia coli, GI1787737, Length=292, Percent_Identity=28.7671232876712, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17542160, Length=313, Percent_Identity=36.1022364217252, Blast_Score=163, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17542154, Length=313, Percent_Identity=36.1022364217252, Blast_Score=163, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17542158, Length=314, Percent_Identity=31.8471337579618, Blast_Score=134, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI17542152, Length=314, Percent_Identity=31.8471337579618, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6321818, Length=294, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30683; Mature: 30552

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSNIYIFQVDAFTKKPFSGNPAAVCITDSKMEEGWMQKVAQEMNLSETAFLWPSNDKS
CCCCEEEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCE
FNLKWFTPTTEVDLCGHATLAAAKILFSQNYLSQSEKNEITFNTNSGKLTANLIDNMIEL
EEEEEECCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHC
DFPIEREVALEEYDELIRALRIGYSSIKFVGKNQFDFLVEVESEEKLGEIAPDHNKLAEL
CCCCCHHHHHHHHHHHHHHHHCCCHHEEEECCCCCEEEEEECCCHHHCCCCCCHHHHHHH
TERGVIVTSASSLPSYDFVSRFFAPAVGVAEDPVTGSAHCNLGPYWKDRLHKDELIAYQD
HHCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEC
SDRGGEIKVKVDEQNDRVILGGQAVVVFKGTLLCQ
CCCCCEEEEEEECCCCEEEECCCEEEEEEEEEECC
>Mature Secondary Structure 
TGSNIYIFQVDAFTKKPFSGNPAAVCITDSKMEEGWMQKVAQEMNLSETAFLWPSNDKS
CCCEEEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCE
FNLKWFTPTTEVDLCGHATLAAAKILFSQNYLSQSEKNEITFNTNSGKLTANLIDNMIEL
EEEEEECCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHC
DFPIEREVALEEYDELIRALRIGYSSIKFVGKNQFDFLVEVESEEKLGEIAPDHNKLAEL
CCCCCHHHHHHHHHHHHHHHHCCCHHEEEECCCCCEEEEEECCCHHHCCCCCCHHHHHHH
TERGVIVTSASSLPSYDFVSRFFAPAVGVAEDPVTGSAHCNLGPYWKDRLHKDELIAYQD
HHCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEC
SDRGGEIKVKVDEQNDRVILGGQAVVVFKGTLLCQ
CCCCCEEEEEEECCCCEEEECCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]