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The map label for this gene is rpoE [C]

Identifier: 188586672

GI number: 188586672

Start: 2180176

End: 2180706

Strand: Reverse

Name: rpoE [C]

Synonym: Nther_2062

Alternate gene names: 188586672

Gene position: 2180706-2180176 (Counterclockwise)

Preceding gene: 188586673

Following gene: 188586671

Centisome position: 68.89

GC content: 33.52

Gene sequence:

>531_bases
ATGGCTTTTACAATTCAAGAAAGTGAGTTTGAGAAAATATTTGCTTATCTGAGGCCAAAAATCTATAGATTTTTTTACTA
TAAAATGCACAATCATGATGAAGCGGAAGAATTGACACAAGAAACATTTAGAAAAGTTTGGGGTCGACTAGATCACTTAA
AACTTACCCCCGATCAAATTACTAGTTACATTTATACTACGGCGAGAAACACTTTGTATGATTTTTGGAGAAAACGAAAA
ATATCGACAGTGGGTTTAGATGAGATCGCTAATGTTGTTGCAAAAGATAATCCCGAACAACTAGCTCTAATTGAAGAAGA
AAATGAGATGATCAAACGTGCTTTAGGAGTTTTGCCTGAGGAACAAAGACTTGTAATAGAATTGAGGTTCGTTGAGGGGT
TAACCACAAAAGAAACCGCAATTCAATTGTTAAAATCTCCAGGATCTGTCAGAAGTTTACAACATCGAGCCATTAAAAAT
TTAAAAAATATTATTACTAGAAATCAAGCAGAAAACCCACTACATAACTAA

Upstream 100 bases:

>100_bases
TTTTATCTAATTACTTACCTTATAGTCCCGATTTCTAGGGACTTTTTATTTTTAGTGGAATATTTTGATATTATAAATCA
AGAAAGAGGTGTTACATAAT

Downstream 100 bases:

>100_bases
AGAAGTATGTTAAAGAAATGAATCAAAAGGTAAAAGTTCTCTTTTTTGCTTAAATCTTGCTACTAATATGATATCATAGA
AATAAATAATTACCCTAAAA

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor; Specialized Sigma Subunit Of RNA Polymerase; ECF Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor SigX; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Region 2 Domain-Containing Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; DNA-Directed RNA Polymerase; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-W Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-H Factor; RNA Polymerase

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MAFTIQESEFEKIFAYLRPKIYRFFYYKMHNHDEAEELTQETFRKVWGRLDHLKLTPDQITSYIYTTARNTLYDFWRKRK
ISTVGLDEIANVVAKDNPEQLALIEEENEMIKRALGVLPEEQRLVIELRFVEGLTTKETAIQLLKSPGSVRSLQHRAIKN
LKNIITRNQAENPLHN

Sequences:

>Translated_176_residues
MAFTIQESEFEKIFAYLRPKIYRFFYYKMHNHDEAEELTQETFRKVWGRLDHLKLTPDQITSYIYTTARNTLYDFWRKRK
ISTVGLDEIANVVAKDNPEQLALIEEENEMIKRALGVLPEEQRLVIELRFVEGLTTKETAIQLLKSPGSVRSLQHRAIKN
LKNIITRNQAENPLHN
>Mature_175_residues
AFTIQESEFEKIFAYLRPKIYRFFYYKMHNHDEAEELTQETFRKVWGRLDHLKLTPDQITSYIYTTARNTLYDFWRKRKI
STVGLDEIANVVAKDNPEQLALIEEENEMIKRALGVLPEEQRLVIELRFVEGLTTKETAIQLLKSPGSVRSLQHRAIKNL
KNIITRNQAENPLHN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20810; Mature: 20679

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFTIQESEFEKIFAYLRPKIYRFFYYKMHNHDEAEELTQETFRKVWGRLDHLKLTPDQI
CCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
TSYIYTTARNTLYDFWRKRKISTVGLDEIANVVAKDNPEQLALIEEENEMIKRALGVLPE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHEEEEHHHHHHHHHHHCCCCC
EQRLVIELRFVEGLTTKETAIQLLKSPGSVRSLQHRAIKNLKNIITRNQAENPLHN
CCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AFTIQESEFEKIFAYLRPKIYRFFYYKMHNHDEAEELTQETFRKVWGRLDHLKLTPDQI
CEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
TSYIYTTARNTLYDFWRKRKISTVGLDEIANVVAKDNPEQLALIEEENEMIKRALGVLPE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHEEEEHHHHHHHHHHHCCCCC
EQRLVIELRFVEGLTTKETAIQLLKSPGSVRSLQHRAIKNLKNIITRNQAENPLHN
CCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA