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The map label for this gene is rbfA

Identifier: 188586071

GI number: 188586071

Start: 1513251

End: 1513646

Strand: Direct

Name: rbfA

Synonym: Nther_1445

Alternate gene names: 188586071

Gene position: 1513251-1513646 (Clockwise)

Preceding gene: 188586070

Following gene: 188586072

Centisome position: 47.8

GC content: 37.37

Gene sequence:

>396_bases
ATGAGCGGAATGAGAAAAGAAAAATTGCAAGAAGAACTTAAAAAAATTATTAGTGATATTTTACAACGAGAGGTTAAAGA
TCCCTCAGTTGGTTTTGTGACAGTGACTTCAGTAGATCTGTCAGGAGATCTCAGGCATGCCAAAGTTTTTGTGAGTATAC
TTGGCGAAAAAGAAAATCAACAGGATTCTTTGCGTGGACTGGAAAAGGCAACAGGATTTATTAGATCCGAGTTAGGAAAA
AGGGTTCGCTTGCGACATGTCCCGGAAATTGTGTTTAAATTTGATGAATCCATAGAGCATGGTGATCACATCAATAAATT
GCTAAAACAAATGAACCTTGGCGAGGATAATGAGGATAATGAAGACAAGGAAAACAATGATCCTGGAGAGGAATAA

Upstream 100 bases:

>100_bases
AAAAGAAGGAGATATTTTTGAAGCTTATACCTATGAAGAAATTTCTCCAGACGTTTAAAGCTTAGTTAGTTCACTATGAA
AATAGATGGATGGTGGTATT

Downstream 100 bases:

>100_bases
CCTATGTATGAATCTATTAATCAATTAAATGAAGTTATTAAAACTAACAATAAATTTATCATTACATGTCATGAAAACCC
TGATGGGGATGCTTTAGGTG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MSGMRKEKLQEELKKIISDILQREVKDPSVGFVTVTSVDLSGDLRHAKVFVSILGEKENQQDSLRGLEKATGFIRSELGK
RVRLRHVPEIVFKFDESIEHGDHINKLLKQMNLGEDNEDNEDKENNDPGEE

Sequences:

>Translated_131_residues
MSGMRKEKLQEELKKIISDILQREVKDPSVGFVTVTSVDLSGDLRHAKVFVSILGEKENQQDSLRGLEKATGFIRSELGK
RVRLRHVPEIVFKFDESIEHGDHINKLLKQMNLGEDNEDNEDKENNDPGEE
>Mature_130_residues
SGMRKEKLQEELKKIISDILQREVKDPSVGFVTVTSVDLSGDLRHAKVFVSILGEKENQQDSLRGLEKATGFIRSELGKR
VRLRHVPEIVFKFDESIEHGDHINKLLKQMNLGEDNEDNEDKENNDPGEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=107, Percent_Identity=42.9906542056075, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_NATTJ (B2A398)

Other databases:

- EMBL:   CP001034
- RefSeq:   YP_001917616.1
- ProteinModelPortal:   B2A398
- SMR:   B2A398
- GeneID:   6316889
- GenomeReviews:   CP001034_GR
- KEGG:   nth:Nther_1445
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14971; Mature: 14840

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGMRKEKLQEELKKIISDILQREVKDPSVGFVTVTSVDLSGDLRHAKVFVSILGEKENQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCH
QDSLRGLEKATGFIRSELGKRVRLRHVPEIVFKFDESIEHGDHINKLLKQMNLGEDNEDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
EDKENNDPGEE
CCCCCCCCCCC
>Mature Secondary Structure 
SGMRKEKLQEELKKIISDILQREVKDPSVGFVTVTSVDLSGDLRHAKVFVSILGEKENQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCH
QDSLRGLEKATGFIRSELGKRVRLRHVPEIVFKFDESIEHGDHINKLLKQMNLGEDNEDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
EDKENNDPGEE
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA