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The map label for this gene is codY [H]

Identifier: 188586012

GI number: 188586012

Start: 1458449

End: 1459234

Strand: Direct

Name: codY [H]

Synonym: Nther_1386

Alternate gene names: 188586012

Gene position: 1458449-1459234 (Clockwise)

Preceding gene: 188586011

Following gene: 188586013

Centisome position: 46.07

GC content: 37.02

Gene sequence:

>786_bases
ATGAGTAGTAGTTTGTTAGAAAAAACACGCAGAATCAACAGAATTCTACAAAAGGCTGCAGGACAGCCTGTAGATTTCGC
GGAAGTAGCCCAAGTTTTAAGGGATGTTATCGAAGCAAACACTTACATTGCCAGCAAGAAAGGTAAAATATTGGGTAGTG
CCCTGGTAGATGAATTCGAGTGTGAGATTATGAAAGATCAAGTTCTTGATCAAGGAAAATTCCCTGAGGATTACAATGAT
TATTTATTATCATTAAATGAAACTAGTTATAATCTAACACAAAAAAGAAACGAATGTGTGTATAAAAATGACGAACAATG
TCTATTTGAAAACAAATTAACAACAGTAGTCCCGATAATCGGGGGAGGAAAGAGACTTGGCTCCTTGATTTTAGCTCGTT
TCAGTAAAGAATTTCAAGACGAAGACTTAATACTAGCAGAGAATGGAGCTACAGTAGTTGGCATGGAAATATTAAGGGCA
AAAGCCGAGGAAATTGAAGAAGAAGCTCGAAATAAAGCTATTGTTCAATTAGCCTTAGGAACTCTATCATATTCTGAGCT
GGAAGCTGTAGAGCACATTTTTGAAGAGTTAGACGGTGACGAAGGTCTATTAGTAGCAAGTAAGGTTGCAGATCGTGTCG
GAATTACCCGATCTGTAATTGTGAATGCCTTGAGAAAGTTTGAAAGTGCAGGAGTTATTGAATCTCGTTCCTTGGGAATG
AAGGGAACTTATATTAAAGTTCTCAACAATCAATTGCTAGAAGAGCTTAGAAAAAGATATGCCTAA

Upstream 100 bases:

>100_bases
ATTGAAGGTGGGATTTTTTCATGGAAATGAAAAGTATTAGTGACTTTTCTATTATACTTACTAGATAAAACAAAAAATTC
TATAAGAAAGGATGAAGTTT

Downstream 100 bases:

>100_bases
TAATTTCCTCACCTGTCTTCGCTGATTTAAAACATAAACAGCAAGAAGTGAAAGGCTATGTGTCCAAAGGATGCATAGCC
TTTTTATTGTGCGCCATGCA

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSSSLLEKTRRINRILQKAAGQPVDFAEVAQVLRDVIEANTYIASKKGKILGSALVDEFECEIMKDQVLDQGKFPEDYND
YLLSLNETSYNLTQKRNECVYKNDEQCLFENKLTTVVPIIGGGKRLGSLILARFSKEFQDEDLILAENGATVVGMEILRA
KAEEIEEEARNKAIVQLALGTLSYSELEAVEHIFEELDGDEGLLVASKVADRVGITRSVIVNALRKFESAGVIESRSLGM
KGTYIKVLNNQLLEELRKRYA

Sequences:

>Translated_261_residues
MSSSLLEKTRRINRILQKAAGQPVDFAEVAQVLRDVIEANTYIASKKGKILGSALVDEFECEIMKDQVLDQGKFPEDYND
YLLSLNETSYNLTQKRNECVYKNDEQCLFENKLTTVVPIIGGGKRLGSLILARFSKEFQDEDLILAENGATVVGMEILRA
KAEEIEEEARNKAIVQLALGTLSYSELEAVEHIFEELDGDEGLLVASKVADRVGITRSVIVNALRKFESAGVIESRSLGM
KGTYIKVLNNQLLEELRKRYA
>Mature_260_residues
SSSLLEKTRRINRILQKAAGQPVDFAEVAQVLRDVIEANTYIASKKGKILGSALVDEFECEIMKDQVLDQGKFPEDYNDY
LLSLNETSYNLTQKRNECVYKNDEQCLFENKLTTVVPIIGGGKRLGSLILARFSKEFQDEDLILAENGATVVGMEILRAK
AEEIEEEARNKAIVQLALGTLSYSELEAVEHIFEELDGDEGLLVASKVADRVGITRSVIVNALRKFESAGVIESRSLGMK
GTYIKVLNNQLLEELRKRYA

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991 [H]

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY [H]

EC number: NA

Molecular weight: Translated: 29184; Mature: 29053

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSLLEKTRRINRILQKAAGQPVDFAEVAQVLRDVIEANTYIASKKGKILGSALVDEFE
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
CEIMKDQVLDQGKFPEDYNDYLLSLNETSYNLTQKRNECVYKNDEQCLFENKLTTVVPII
HHHHHHHHHCCCCCCCCCHHHEEECCCCCCHHHHHHCCCCCCCCCHHHHHCCCCEEEEEC
GGGKRLGSLILARFSKEFQDEDLILAENGATVVGMEILRAKAEEIEEEARNKAIVQLALG
CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLSYSELEAVEHIFEELDGDEGLLVASKVADRVGITRSVIVNALRKFESAGVIESRSLGM
HCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCC
KGTYIKVLNNQLLEELRKRYA
CCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSSLLEKTRRINRILQKAAGQPVDFAEVAQVLRDVIEANTYIASKKGKILGSALVDEFE
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
CEIMKDQVLDQGKFPEDYNDYLLSLNETSYNLTQKRNECVYKNDEQCLFENKLTTVVPII
HHHHHHHHHCCCCCCCCCHHHEEECCCCCCHHHHHHCCCCCCCCCHHHHHCCCCEEEEEC
GGGKRLGSLILARFSKEFQDEDLILAENGATVVGMEILRAKAEEIEEEARNKAIVQLALG
CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLSYSELEAVEHIFEELDGDEGLLVASKVADRVGITRSVIVNALRKFESAGVIESRSLGM
HCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCC
KGTYIKVLNNQLLEELRKRYA
CCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA