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The map label for this gene is 188585996

Identifier: 188585996

GI number: 188585996

Start: 1442360

End: 1442590

Strand: Direct

Name: 188585996

Synonym: Nther_1370

Alternate gene names: NA

Gene position: 1442360-1442590 (Clockwise)

Preceding gene: 188585995

Following gene: 188585997

Centisome position: 45.56

GC content: 39.83

Gene sequence:

>231_bases
TTGAAAGAACTGGTGGAATACATTGCCAAATCTATAGTCGATCATCCTGAAGAAGTGTCTGTGTCAGAAGTAGAAGGCAA
AAAAGCGATGGTCCTTGAGTTAAAAGTTCATCCTGATGATATGGGTAAGGTGATTGGTAAACAAGGTAGGATTGCTAAGT
CTATCCGAACTGTGGTTAGTGCTGCTGCTATAAGAGAAAATAAAAGGGTTATGGTGGAAATAGTGCAGTGA

Upstream 100 bases:

>100_bases
AAGAAATGGTTACAAGAAGGGGCTAAGCCTTCACAAAAAGTTCGTTCTCTGTTAACCCAAGCCGGTGTAGTGGAAAAATA
ACAGAAGGAGGCTTTTAACA

Downstream 100 bases:

>100_bases
TGTAATGTTATTTGGGGCAGCAGATAGTATTCTTAAAAGTGGGGTGAATCAAAATGCACCCTGAATTAGATCTTGTTTAT
GTAGGGAAAATTGTAGGTAC

Product: RNA-binding protein (KH domain)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MKELVEYIAKSIVDHPEEVSVSEVEGKKAMVLELKVHPDDMGKVIGKQGRIAKSIRTVVSAAAIRENKRVMVEIVQ

Sequences:

>Translated_76_residues
MKELVEYIAKSIVDHPEEVSVSEVEGKKAMVLELKVHPDDMGKVIGKQGRIAKSIRTVVSAAAIRENKRVMVEIVQ
>Mature_76_residues
MKELVEYIAKSIVDHPEEVSVSEVEGKKAMVLELKVHPDDMGKVIGKQGRIAKSIRTVVSAAAIRENKRVMVEIVQ

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009019
- InterPro:   IPR018111
- InterPro:   IPR020627 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 8442; Mature: 8442

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELVEYIAKSIVDHPEEVSVSEVEGKKAMVLELKVHPDDMGKVIGKQGRIAKSIRTVVS
CHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEEEEEECCCHHHHHHCCCCHHHHHHHHHHH
AAAIRENKRVMVEIVQ
HHHHHCCCEEEEEEEC
>Mature Secondary Structure
MKELVEYIAKSIVDHPEEVSVSEVEGKKAMVLELKVHPDDMGKVIGKQGRIAKSIRTVVS
CHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEEEEEECCCHHHHHHCCCCHHHHHHHHHHH
AAAIRENKRVMVEIVQ
HHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]