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The map label for this gene is rimM

Identifier: 188585997

GI number: 188585997

Start: 1442644

End: 1443183

Strand: Direct

Name: rimM

Synonym: Nther_1371

Alternate gene names: 188585997

Gene position: 1442644-1443183 (Clockwise)

Preceding gene: 188585996

Following gene: 188585998

Centisome position: 45.57

GC content: 36.11

Gene sequence:

>540_bases
ATGCACCCTGAATTAGATCTTGTTTATGTAGGGAAAATTGTAGGTACTCACGGTGTAAAAGGTGAGTTGAAAGTCATTTC
ACTCACCGATATTGAAAACCGATTTAATGAGCTAGATAGGGTCTATCTTGTCAATGAACAAGATCACTATGACCCTATTA
TTGCTCATATTGAATCATCCTTTACTCATAAAAACATGGAAATTGTCAAGTTTAGTGAATGGGATGATATCAATCAAGTT
GAGGGTTTTCATGACTGGTATATTAAAATCCCTAGGGAAGAAAGGCCACAGTTAGAAGAAGATGAATATTACTTTGATCA
AATCACCGGTTTGTCTGTTGTTACCGTGGAAGATGAATTTCTGGGTACTGTAACCAATATTTACCAAACTGGGAGTAACG
ATGTCTACGAAGTCAGTAAAGAACAAGATGATAAGCCAATTTTAATTCCAGCCCTTTATGAAGTAGTTAAAAAAATAGAT
CTTGACGAACAAATTATGATAGTGGATCTACCAGAGGGGCTCTTAGACGAGGAGGAATAA

Upstream 100 bases:

>100_bases
CTGCTATAAGAGAAAATAAAAGGGTTATGGTGGAAATAGTGCAGTGATGTAATGTTATTTGGGGCAGCAGATAGTATTCT
TAAAAGTGGGGTGAATCAAA

Downstream 100 bases:

>100_bases
AATGCATATCGATATCATGACATTATTCCCGGAAATGTTTCACGGCGTATTGGAAAGCAGTATTATTGGTAGAGCCCTGG
CTCGAGAAATGATTACAGTA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MHPELDLVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESSFTHKNMEIVKFSEWDDINQV
EGFHDWYIKIPREERPQLEEDEYYFDQITGLSVVTVEDEFLGTVTNIYQTGSNDVYEVSKEQDDKPILIPALYEVVKKID
LDEQIMIVDLPEGLLDEEE

Sequences:

>Translated_179_residues
MHPELDLVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESSFTHKNMEIVKFSEWDDINQV
EGFHDWYIKIPREERPQLEEDEYYFDQITGLSVVTVEDEFLGTVTNIYQTGSNDVYEVSKEQDDKPILIPALYEVVKKID
LDEQIMIVDLPEGLLDEEE
>Mature_179_residues
MHPELDLVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESSFTHKNMEIVKFSEWDDINQV
EGFHDWYIKIPREERPQLEEDEYYFDQITGLSVVTVEDEFLGTVTNIYQTGSNDVYEVSKEQDDKPILIPALYEVVKKID
LDEQIMIVDLPEGLLDEEE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=176, Percent_Identity=30.6818181818182, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_NATTJ (B2A2N9)

Other databases:

- EMBL:   CP001034
- RefSeq:   YP_001917542.1
- ProteinModelPortal:   B2A2N9
- SMR:   B2A2N9
- GeneID:   6315684
- GenomeReviews:   CP001034_GR
- KEGG:   nth:Nther_1371
- HOGENOM:   HBG703775
- OMA:   NLVPFFI
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20891; Mature: 20891

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPELDLVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESS
CCCCCEEEEEEEEECCCCCCCEEEEEEEECHHHHHHHCCEEEEECCCCCCCHHHHHHHHC
FTHKNMEIVKFSEWDDINQVEGFHDWYIKIPREERPQLEEDEYYFDQITGLSVVTVEDEF
CCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCEEEEEECHHH
LGTVTNIYQTGSNDVYEVSKEQDDKPILIPALYEVVKKIDLDEQIMIVDLPEGLLDEEE
HHHHHHHHCCCCCCEEECCCCCCCCCEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MHPELDLVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESS
CCCCCEEEEEEEEECCCCCCCEEEEEEEECHHHHHHHCCEEEEECCCCCCCHHHHHHHHC
FTHKNMEIVKFSEWDDINQVEGFHDWYIKIPREERPQLEEDEYYFDQITGLSVVTVEDEF
CCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCEEEEEECHHH
LGTVTNIYQTGSNDVYEVSKEQDDKPILIPALYEVVKKIDLDEQIMIVDLPEGLLDEEE
HHHHHHHHCCCCCCEEECCCCCCCCCEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA