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The map label for this gene is rpe [H]

Identifier: 188585968

GI number: 188585968

Start: 1416587

End: 1417261

Strand: Direct

Name: rpe [H]

Synonym: Nther_1342

Alternate gene names: 188585968

Gene position: 1416587-1417261 (Clockwise)

Preceding gene: 188585967

Following gene: 188585970

Centisome position: 44.75

GC content: 38.22

Gene sequence:

>675_bases
ATGATGACATTAGTGGCACCATCAATATTATCAGCTGATTTATTGAAGTTAGAAGAGCAGATCAAGGCTGTTGAAGCTGC
TGGGGCAGATATGATTCACGTCGATGTAATGGATGGACGATTCGTTCCCAATATAACCATGGGACCCAAAATTGTTGAAG
CCCTCAAGAGAATAACCTCTATTCCTTGTGATGTACATTTGATGATTGAAGAACCGGAAAAGTATATCGACAAATTCGCT
CAAGCAGGTGCCGATATATTGACTATTCATCAGGAAGCTTCATTGCATTTGGACAGAAATATAGAAGCAATTACTGCACA
TGATATTAAAGCTGGAGTTTCTTTAAACCCTGCTACACCTTTAGAGCAAATAAAGTGGGTATTACCAAAACTGGATCAGG
TTTTATTGATGAGTGTTAATCCTGGGTTTGGTGGACAAAAATATATACCATATGTATCAGGCAAAATAAGCGATTTGGAT
AAAATTCGAAAGGCGGGTAAATATAGCTTTATGATTCAAGTTGATGGAGGAATAAATCACAGTAATGCCAAACAGGTGCT
GGACTCTGGTGCAGATATACTGGTAGCAGGCTCTGCTATATTTTCATCCAAACTGGGGTTAGAACAAGCTATTAAATTGT
TAAAATACCCTTCCCCAGATCCAACTTCTATTTAG

Upstream 100 bases:

>100_bases
GTCAAGTTAAGAAATTGGTCGGCACTGATATACCTACTACGAGATACGAACACTTTGTCAAATTTTTTGAAGAATTGGTA
GACATGGAAAGGAGTTTTTG

Downstream 100 bases:

>100_bases
ATTTTCTCTAAAATTTGTACATGCCGATTTTTCGAAAAGAGTTCATAGTTAAACATAGATTAGTGAATTATGCATAAAAT
ATAATAAACAAAATAGAAGA

Product: ribulose-5-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MMTLVAPSILSADLLKLEEQIKAVEAAGADMIHVDVMDGRFVPNITMGPKIVEALKRITSIPCDVHLMIEEPEKYIDKFA
QAGADILTIHQEASLHLDRNIEAITAHDIKAGVSLNPATPLEQIKWVLPKLDQVLLMSVNPGFGGQKYIPYVSGKISDLD
KIRKAGKYSFMIQVDGGINHSNAKQVLDSGADILVAGSAIFSSKLGLEQAIKLLKYPSPDPTSI

Sequences:

>Translated_224_residues
MMTLVAPSILSADLLKLEEQIKAVEAAGADMIHVDVMDGRFVPNITMGPKIVEALKRITSIPCDVHLMIEEPEKYIDKFA
QAGADILTIHQEASLHLDRNIEAITAHDIKAGVSLNPATPLEQIKWVLPKLDQVLLMSVNPGFGGQKYIPYVSGKISDLD
KIRKAGKYSFMIQVDGGINHSNAKQVLDSGADILVAGSAIFSSKLGLEQAIKLLKYPSPDPTSI
>Mature_224_residues
MMTLVAPSILSADLLKLEEQIKAVEAAGADMIHVDVMDGRFVPNITMGPKIVEALKRITSIPCDVHLMIEEPEKYIDKFA
QAGADILTIHQEASLHLDRNIEAITAHDIKAGVSLNPATPLEQIKWVLPKLDQVLLMSVNPGFGGQKYIPYVSGKISDLD
KIRKAGKYSFMIQVDGGINHSNAKQVLDSGADILVAGSAIFSSKLGLEQAIKLLKYPSPDPTSI

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=202, Percent_Identity=37.1287128712871, Blast_Score=132, Evalue=2e-31,
Organism=Homo sapiens, GI219879828, Length=202, Percent_Identity=35.6435643564356, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI24307923, Length=158, Percent_Identity=29.1139240506329, Blast_Score=74, Evalue=7e-14,
Organism=Escherichia coli, GI1789788, Length=199, Percent_Identity=46.2311557788945, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1790523, Length=212, Percent_Identity=37.7358490566038, Blast_Score=173, Evalue=6e-45,
Organism=Escherichia coli, GI1790754, Length=201, Percent_Identity=30.8457711442786, Blast_Score=101, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=204, Percent_Identity=40.6862745098039, Blast_Score=142, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6322341, Length=216, Percent_Identity=38.8888888888889, Blast_Score=152, Evalue=4e-38,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=33.0188679245283, Blast_Score=124, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24281; Mature: 24281

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTLVAPSILSADLLKLEEQIKAVEAAGADMIHVDVMDGRFVPNITMGPKIVEALKRITS
CCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHHHC
IPCDVHLMIEEPEKYIDKFAQAGADILTIHQEASLHLDRNIEAITAHDIKAGVSLNPATP
CCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCEEECCCCEEEEECHHCCCCCCCCCCC
LEQIKWVLPKLDQVLLMSVNPGFGGQKYIPYVSGKISDLDKIRKAGKYSFMIQVDGGINH
HHHHHHHHHHHCEEEEEEECCCCCCCEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCC
SNAKQVLDSGADILVAGSAIFSSKLGLEQAIKLLKYPSPDPTSI
HHHHHHHHCCCCEEEECHHHHHHHCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MMTLVAPSILSADLLKLEEQIKAVEAAGADMIHVDVMDGRFVPNITMGPKIVEALKRITS
CCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHHHC
IPCDVHLMIEEPEKYIDKFAQAGADILTIHQEASLHLDRNIEAITAHDIKAGVSLNPATP
CCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCEEECCCCEEEEECHHCCCCCCCCCCC
LEQIKWVLPKLDQVLLMSVNPGFGGQKYIPYVSGKISDLDKIRKAGKYSFMIQVDGGINH
HHHHHHHHHHHCEEEEEEECCCCCCCEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCC
SNAKQVLDSGADILVAGSAIFSSKLGLEQAIKLLKYPSPDPTSI
HHHHHHHHCCCCEEEECHHHHHHHCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]