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The map label for this gene is yggS [C]

Identifier: 188585941

GI number: 188585941

Start: 1388264

End: 1388965

Strand: Direct

Name: yggS [C]

Synonym: Nther_1315

Alternate gene names: 188585941

Gene position: 1388264-1388965 (Clockwise)

Preceding gene: 188585940

Following gene: 188585942

Centisome position: 43.86

GC content: 34.33

Gene sequence:

>702_bases
ATGACGGCATATATCAAAAGTAATCTTCAAGAAATTAAGGAAAAAATGTCAAAATCTGCGGAACTAGTCGGTAAATCCCT
TGATGATTTAACATTGATAGGAATTACTAAGTATGCAACAACTGAACAAATAGCTGAACTATACAGATTAGGGGTGACAA
ATATAGGAGAAAACAAAGTTCAAGATGCATTACCTAAAATTGAAGAATTAGAAGATCTTGAAATTAACTGGCACTTCGTA
GGTCATTTACAAAGTAATAAGGTAAAGTACTTAATCAATCATATATCTCTTTACCAGGCTTTGGATAGGACCTCACTGGC
TAAGGAGTTGCACAAACGTGCAGATAAAAACAATGTCAATGTAAATGCTTTGGTTCAAATAAATATTGCTGGAGATGAAA
ATAAATTTGGGCTGAGTCAGGAGGAAACGGAACATTTTATTGAAAAAGTATTAAATAATTATCCACGTATCAATATCAAG
GGTCTTATGACCATGCCTCCTTATTTTTCAGAACCGGAGCAAGTTCGTCCATATTATAGTAGAATGAGAGAACTATTTGA
ATTGTTTAAAACAAAATTTGGAGAACAACATTTTCAATATCTGTCAATGGGGATGTCCCATGACTACCATATAGCCATTG
AAGAAGGAGCAAACATGGTTAGAGTTGGTAGGTCACTGTTTACACAAAGAGAGGAGGGGTAA

Upstream 100 bases:

>100_bases
TTGAATGAGGGGAATTTATTGATTAGGAATTCCTTTTTCGTTCGAGAAGGTGATCGAATACGATAATACAAAATAATTAC
AATAAATGGGGGGGAGGGTA

Downstream 100 bases:

>100_bases
GATAATATGAATTTTTTTGAAAAGATACTAGTATTTTTAGGGCTAGCCGAAGAAGCAGAGGAGGAAATTATAGAAGATGA
AGAAGATGTAGCACCAGTTA

Product: alanine racemase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTAYIKSNLQEIKEKMSKSAELVGKSLDDLTLIGITKYATTEQIAELYRLGVTNIGENKVQDALPKIEELEDLEINWHFV
GHLQSNKVKYLINHISLYQALDRTSLAKELHKRADKNNVNVNALVQINIAGDENKFGLSQEETEHFIEKVLNNYPRINIK
GLMTMPPYFSEPEQVRPYYSRMRELFELFKTKFGEQHFQYLSMGMSHDYHIAIEEGANMVRVGRSLFTQREEG

Sequences:

>Translated_233_residues
MTAYIKSNLQEIKEKMSKSAELVGKSLDDLTLIGITKYATTEQIAELYRLGVTNIGENKVQDALPKIEELEDLEINWHFV
GHLQSNKVKYLINHISLYQALDRTSLAKELHKRADKNNVNVNALVQINIAGDENKFGLSQEETEHFIEKVLNNYPRINIK
GLMTMPPYFSEPEQVRPYYSRMRELFELFKTKFGEQHFQYLSMGMSHDYHIAIEEGANMVRVGRSLFTQREEG
>Mature_232_residues
TAYIKSNLQEIKEKMSKSAELVGKSLDDLTLIGITKYATTEQIAELYRLGVTNIGENKVQDALPKIEELEDLEINWHFVG
HLQSNKVKYLINHISLYQALDRTSLAKELHKRADKNNVNVNALVQINIAGDENKFGLSQEETEHFIEKVLNNYPRINIKG
LMTMPPYFSEPEQVRPYYSRMRELFELFKTKFGEQHFQYLSMGMSHDYHIAIEEGANMVRVGRSLFTQREEG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=240, Percent_Identity=29.5833333333333, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=33.1896551724138, Blast_Score=135, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17533025, Length=209, Percent_Identity=30.1435406698565, Blast_Score=92, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6319435, Length=217, Percent_Identity=32.7188940092166, Blast_Score=87, Evalue=2e-18,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=29.8578199052133, Blast_Score=93, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26974; Mature: 26843

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAYIKSNLQEIKEKMSKSAELVGKSLDDLTLIGITKYATTEQIAELYRLGVTNIGENKV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHH
QDALPKIEELEDLEINWHFVGHLQSNKVKYLINHISLYQALDRTSLAKELHKRADKNNVN
HHHCCHHHHHCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VNALVQINIAGDENKFGLSQEETEHFIEKVLNNYPRINIKGLMTMPPYFSEPEQVRPYYS
EEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHCCHHHH
RMRELFELFKTKFGEQHFQYLSMGMSHDYHIAIEEGANMVRVGRSLFTQREEG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TAYIKSNLQEIKEKMSKSAELVGKSLDDLTLIGITKYATTEQIAELYRLGVTNIGENKV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHH
QDALPKIEELEDLEINWHFVGHLQSNKVKYLINHISLYQALDRTSLAKELHKRADKNNVN
HHHCCHHHHHCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VNALVQINIAGDENKFGLSQEETEHFIEKVLNNYPRINIKGLMTMPPYFSEPEQVRPYYS
EEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHCCHHHH
RMRELFELFKTKFGEQHFQYLSMGMSHDYHIAIEEGANMVRVGRSLFTQREEG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]