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The map label for this gene is ycgR [H]

Identifier: 188585593

GI number: 188585593

Start: 1024701

End: 1025636

Strand: Direct

Name: ycgR [H]

Synonym: Nther_0966

Alternate gene names: 188585593

Gene position: 1024701-1025636 (Clockwise)

Preceding gene: 188585592

Following gene: 188585596

Centisome position: 32.37

GC content: 34.51

Gene sequence:

>936_bases
ATGTTAGATACTGAACATTTAATAGAAGTAGCAGGGTTTTTTGGATATTTAGTTGGGGAACTAGTCCTGTTATTTATAGT
AATTAGTTTTTTAGTAGGTTTATTACAAGAATATGTAAATCCCGACCGTATTAAAAATTATTTAGAGGAAAAAAATTTAG
GAGTATTTGGTAATATTATAGGAGCTTTTTTTGGTTCCTTAACACCATTTTGTACCTGTTCAACAATACCAATAACCCTT
GGTCTTTTAAAAAGTGGAGTCCCTTTTGGAATAACAATGAGTTTTTTCTTTGCCTCACCTCTTTTAAATCCCGTTGTGAT
CATCTTAATGCTAGCTCTGTTTGGCATTGAAATTACAGTGATTTACTGGCTGATTTTATTTCCCGTATCAGTTGTAACTG
GCATTTTTCTCGAAAAATTTGGCTATGAACAAGAGATAAAACAAGTTAAAGTTGTCAGAGATGAACAAGAATCAGAAGAA
GTACAAAACGATGCTGGTTTTATAGAACGGGTGAAACCTAAATTAAAAAGGGCAAGTGGATTTGCCGTTAATTTATTCCG
CCAGGTCATTGTATTCTTGATAATTGGAGCTGGAGTTGGAGCTTTTATCTACGGCTTTGTGCCAGAAGAATTTATAGTTA
GAGTTGCAGGCCCCGACCGAATCTTGTCTATTCCCATTGCTTCGGTAATTGGAATCCCAATGTATGTAAGAGAGGCTACT
ATTCTTCCTATAAGTTCAGTTTTGATAGATCAGGGTATGAATGTTGGTGCAGTCATGGCTCTAGTAATAGGCGGCACTGG
AGCAAGTTTACCGGAACTAACTATGTTGAGCTCCATATATAAGAGAAAATTACTTATTACTTATATAATCACGGTAATAG
TTGTAGCAATTTTTGCTGGATTTTTATTTAACTTATTGCTTTCTTTAGGTGTTTAA

Upstream 100 bases:

>100_bases
GGGATGGACAGGATAAAGAAAATAGTGATAGTGAGAAGTAATAAAATTAATTGTAATGAATATATCAGGAAATAGTGTAT
AAGGGAAGGCAGGGGATAGC

Downstream 100 bases:

>100_bases
TAATGTAAAAAGTTCTAGTTTCTAAAAGTTTTCGTCGACTCTTAACTGAATTTCTTCTAAGACTCCTTCTAACTCTTCAA
TAGTGGCCCCGTATTCTGTC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLDTEHLIEVAGFFGYLVGELVLLFIVISFLVGLLQEYVNPDRIKNYLEEKNLGVFGNIIGAFFGSLTPFCTCSTIPITL
GLLKSGVPFGITMSFFFASPLLNPVVIILMLALFGIEITVIYWLILFPVSVVTGIFLEKFGYEQEIKQVKVVRDEQESEE
VQNDAGFIERVKPKLKRASGFAVNLFRQVIVFLIIGAGVGAFIYGFVPEEFIVRVAGPDRILSIPIASVIGIPMYVREAT
ILPISSVLIDQGMNVGAVMALVIGGTGASLPELTMLSSIYKRKLLITYIITVIVVAIFAGFLFNLLLSLGV

Sequences:

>Translated_311_residues
MLDTEHLIEVAGFFGYLVGELVLLFIVISFLVGLLQEYVNPDRIKNYLEEKNLGVFGNIIGAFFGSLTPFCTCSTIPITL
GLLKSGVPFGITMSFFFASPLLNPVVIILMLALFGIEITVIYWLILFPVSVVTGIFLEKFGYEQEIKQVKVVRDEQESEE
VQNDAGFIERVKPKLKRASGFAVNLFRQVIVFLIIGAGVGAFIYGFVPEEFIVRVAGPDRILSIPIASVIGIPMYVREAT
ILPISSVLIDQGMNVGAVMALVIGGTGASLPELTMLSSIYKRKLLITYIITVIVVAIFAGFLFNLLLSLGV
>Mature_311_residues
MLDTEHLIEVAGFFGYLVGELVLLFIVISFLVGLLQEYVNPDRIKNYLEEKNLGVFGNIIGAFFGSLTPFCTCSTIPITL
GLLKSGVPFGITMSFFFASPLLNPVVIILMLALFGIEITVIYWLILFPVSVVTGIFLEKFGYEQEIKQVKVVRDEQESEE
VQNDAGFIERVKPKLKRASGFAVNLFRQVIVFLIIGAGVGAFIYGFVPEEFIVRVAGPDRILSIPIASVIGIPMYVREAT
ILPISSVLIDQGMNVGAVMALVIGGTGASLPELTMLSSIYKRKLLITYIITVIVVAIFAGFLFNLLLSLGV

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 34057; Mature: 34057

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDTEHLIEVAGFFGYLVGELVLLFIVISFLVGLLQEYVNPDRIKNYLEEKNLGVFGNII
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHH
GAFFGSLTPFCTCSTIPITLGLLKSGVPFGITMSFFFASPLLNPVVIILMLALFGIEITV
HHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYWLILFPVSVVTGIFLEKFGYEQEIKQVKVVRDEQESEEVQNDAGFIERVKPKLKRASG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FAVNLFRQVIVFLIIGAGVGAFIYGFVPEEFIVRVAGPDRILSIPIASVIGIPMYVREAT
HHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHEEEECCCCHHHHCCHHHHHCCHHHHHHHH
ILPISSVLIDQGMNVGAVMALVIGGTGASLPELTMLSSIYKRKLLITYIITVIVVAIFAG
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFNLLLSLGV
HHHHHHHHHCC
>Mature Secondary Structure
MLDTEHLIEVAGFFGYLVGELVLLFIVISFLVGLLQEYVNPDRIKNYLEEKNLGVFGNII
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHH
GAFFGSLTPFCTCSTIPITLGLLKSGVPFGITMSFFFASPLLNPVVIILMLALFGIEITV
HHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYWLILFPVSVVTGIFLEKFGYEQEIKQVKVVRDEQESEEVQNDAGFIERVKPKLKRASG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FAVNLFRQVIVFLIIGAGVGAFIYGFVPEEFIVRVAGPDRILSIPIASVIGIPMYVREAT
HHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHEEEECCCCHHHHCCHHHHHCCHHHHHHHH
ILPISSVLIDQGMNVGAVMALVIGGTGASLPELTMLSSIYKRKLLITYIITVIVVAIFAG
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFNLLLSLGV
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]