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The map label for this gene is cbiD [H]

Identifier: 188585558

GI number: 188585558

Start: 987809

End: 988981

Strand: Direct

Name: cbiD [H]

Synonym: Nther_0930

Alternate gene names: 188585558

Gene position: 987809-988981 (Clockwise)

Preceding gene: 188585557

Following gene: 188585559

Centisome position: 31.2

GC content: 39.81

Gene sequence:

>1173_bases
ATGACCAGTTATCTAAGCAAACAAAATAGCAGTTTACATCAGAATAGCTTGAAAAAGGGGATTACCACAGGAAGCTGCGC
AACAGCTACGGCTAAAGCTGCCCTATTGGCTGAATATTCGGGGGAATATCCAAAAGAAGTGACGATAATTACTCCTGAAG
AGAAAAAACTTACCATCCCCATAGCAGCTTATGGTTTCAGGACTAATGATAAAAAGTCTGCTTGGGTACGAAAGGATGCA
GGAGATGATAGTGATATAACCCATGGGACATTAATTGGAGCTAAGGTAAAATTGACTAAAGACAGGGAGATAGTTATCGA
CGGAGGTCAAGGTGTGGGCCAAGTAACGAAACCTGGTTTACCTGTAGAAGTGGGGCAAGCTGCTATAAATCCCGGTCCCA
AACAAATGATAGTCAATAACTTAAGAGAATTTTTACCTAAAGACAAAGGAGTTTCTATAACCATCACAGTTCCCAAGGGA
GAACAGCTGGCGGAGAAAACGTTAAATTCAAAGCTTGGAATAGTTAAAGGGATTTCAATTTTGGGAACTACGGGTATTGT
AGAACCGATGTCAACTCAAGCCATGAAAGAGTCATTAAAAATACAACTTCCTCAGATCAATCAACTAAAGCAAGATACAC
TTGTTATTGTACCTGGAAGATCTGGTGAAAAAATAGCTCTTTCCCGGGGAGTAAATGGTGACTGTATAGCAATAGTGGGT
AATTATATCGGTTATATGATTAGAAATGCTATGAAATATGATTTTACAAAAATATTATTATTAGGACATATTGGGAAACT
GGCCAAGTTGTCGGCGGGGATTTTTAATACTTACAGTAAAACCGCTGATGCAAGGAGAGAAATTTTTGTCACTCATGCGG
CTTTAAAGGGGTTTTCAAATCCAGTAATTGATCAGTTGTGGGAGTCAGTTACTGCCGAGGAGAGCGTTAATATCTTGTTA
AATCACGATGAGACAACAGGCAGTAATCAAGGTGACAGAACTTTGAAAAGCATTGCCCAGGAAGCAGAACATAGGGTTAG
CGAATTAACAGGACCCGACCATCAAGTAGGGGTTTTATTAACCAATAGGCCCGGTAAGATCATTGCATGGGGTAATGGAG
CAAAAGATATATGCTATAGCAAAGGGTGGGATGTATGGGAAAGATTATCATAG

Upstream 100 bases:

>100_bases
CCCAAGATCACAATATCTCTAGCGGCATTAGGATTCATTCCACTAATCACCAGTGTTTTTTATAAGTATATTTGTAGAAG
ACTTTTAAGGGGTAGTGATT

Downstream 100 bases:

>100_bases
TGGGAATTGGACCAGGAAGTAAATCTTACTTAACAGAACAGGGAAAAAATTATATTTTAAATGCAAGCATTCTTGTGGGA
TCTCAACCTGCTCTTAAATT

Product: cobalamin biosynthesis protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTSYLSKQNSSLHQNSLKKGITTGSCATATAKAALLAEYSGEYPKEVTIITPEEKKLTIPIAAYGFRTNDKKSAWVRKDA
GDDSDITHGTLIGAKVKLTKDREIVIDGGQGVGQVTKPGLPVEVGQAAINPGPKQMIVNNLREFLPKDKGVSITITVPKG
EQLAEKTLNSKLGIVKGISILGTTGIVEPMSTQAMKESLKIQLPQINQLKQDTLVIVPGRSGEKIALSRGVNGDCIAIVG
NYIGYMIRNAMKYDFTKILLLGHIGKLAKLSAGIFNTYSKTADARREIFVTHAALKGFSNPVIDQLWESVTAEESVNILL
NHDETTGSNQGDRTLKSIAQEAEHRVSELTGPDHQVGVLLTNRPGKIIAWGNGAKDICYSKGWDVWERLS

Sequences:

>Translated_390_residues
MTSYLSKQNSSLHQNSLKKGITTGSCATATAKAALLAEYSGEYPKEVTIITPEEKKLTIPIAAYGFRTNDKKSAWVRKDA
GDDSDITHGTLIGAKVKLTKDREIVIDGGQGVGQVTKPGLPVEVGQAAINPGPKQMIVNNLREFLPKDKGVSITITVPKG
EQLAEKTLNSKLGIVKGISILGTTGIVEPMSTQAMKESLKIQLPQINQLKQDTLVIVPGRSGEKIALSRGVNGDCIAIVG
NYIGYMIRNAMKYDFTKILLLGHIGKLAKLSAGIFNTYSKTADARREIFVTHAALKGFSNPVIDQLWESVTAEESVNILL
NHDETTGSNQGDRTLKSIAQEAEHRVSELTGPDHQVGVLLTNRPGKIIAWGNGAKDICYSKGWDVWERLS
>Mature_389_residues
TSYLSKQNSSLHQNSLKKGITTGSCATATAKAALLAEYSGEYPKEVTIITPEEKKLTIPIAAYGFRTNDKKSAWVRKDAG
DDSDITHGTLIGAKVKLTKDREIVIDGGQGVGQVTKPGLPVEVGQAAINPGPKQMIVNNLREFLPKDKGVSITITVPKGE
QLAEKTLNSKLGIVKGISILGTTGIVEPMSTQAMKESLKIQLPQINQLKQDTLVIVPGRSGEKIALSRGVNGDCIAIVGN
YIGYMIRNAMKYDFTKILLLGHIGKLAKLSAGIFNTYSKTADARREIFVTHAALKGFSNPVIDQLWESVTAEESVNILLN
HDETTGSNQGDRTLKSIAQEAEHRVSELTGPDHQVGVLLTNRPGKIIAWGNGAKDICYSKGWDVWERLS

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 42160; Mature: 42029

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSYLSKQNSSLHQNSLKKGITTGSCATATAKAALLAEYSGEYPKEVTIITPEEKKLTIP
CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEE
IAAYGFRTNDKKSAWVRKDAGDDSDITHGTLIGAKVKLTKDREIVIDGGQGVGQVTKPGL
EEEECCCCCCCCCCEEECCCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCCCCCCCC
PVEVGQAAINPGPKQMIVNNLREFLPKDKGVSITITVPKGEQLAEKTLNSKLGIVKGISI
CHHHCHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHCHHH
LGTTGIVEPMSTQAMKESLKIQLPQINQLKQDTLVIVPGRSGEKIALSRGVNGDCIAIVG
CCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCCCEEEHHH
NYIGYMIRNAMKYDFTKILLLGHIGKLAKLSAGIFNTYSKTADARREIFVTHAALKGFSN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCCC
PVIDQLWESVTAEESVNILLNHDETTGSNQGDRTLKSIAQEAEHRVSELTGPDHQVGVLL
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
TNRPGKIIAWGNGAKDICYSKGWDVWERLS
ECCCCEEEEECCCCCCHHHCCCCCHHHHCC
>Mature Secondary Structure 
TSYLSKQNSSLHQNSLKKGITTGSCATATAKAALLAEYSGEYPKEVTIITPEEKKLTIP
CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEE
IAAYGFRTNDKKSAWVRKDAGDDSDITHGTLIGAKVKLTKDREIVIDGGQGVGQVTKPGL
EEEECCCCCCCCCCEEECCCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCCCCCCCC
PVEVGQAAINPGPKQMIVNNLREFLPKDKGVSITITVPKGEQLAEKTLNSKLGIVKGISI
CHHHCHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHCHHH
LGTTGIVEPMSTQAMKESLKIQLPQINQLKQDTLVIVPGRSGEKIALSRGVNGDCIAIVG
CCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCCCEEEHHH
NYIGYMIRNAMKYDFTKILLLGHIGKLAKLSAGIFNTYSKTADARREIFVTHAALKGFSN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCCC
PVIDQLWESVTAEESVNILLNHDETTGSNQGDRTLKSIAQEAEHRVSELTGPDHQVGVLL
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
TNRPGKIIAWGNGAKDICYSKGWDVWERLS
ECCCCEEEEECCCCCCHHHCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA