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The map label for this gene is ydjX [C]

Identifier: 188585557

GI number: 188585557

Start: 987097

End: 987837

Strand: Direct

Name: ydjX [C]

Synonym: Nther_0929

Alternate gene names: 188585557

Gene position: 987097-987837 (Clockwise)

Preceding gene: 188585554

Following gene: 188585558

Centisome position: 31.18

GC content: 33.87

Gene sequence:

>741_bases
GTGGATAAAATACATCCCGGTTTCAAAATGAAATCTTTGGCACAATTATTATTTTGCTTACTTATTTTCAGCACCTTATA
TATTATTTTATTTTTTAATTCCATTGACCTGACTTGGTTCCAAGACAATTTACATATCCTACGTTCTTACGCAGATAATA
ACTTGTTTTTAACAATATTAATCTTTTTTATAATCCGCTTTTTCTTTGCTGTCGTATCAATTCCCGGTAGTGGTGTCTTA
ACTATTGTTGCTGGTGCTATTTTTGGCTTTTTATTGGCTTCGATTTTAGTTACCATATCTGTTAGTCTTGGGGTATTTGT
GGTGTTTTTAATAAGTAGATATGCACTCCGTGACTACCTTACAAGAAAATTCTCAGATAAACTTGAGTATGTTGAGCAAG
TCTCGCGAGACCATGGAGCAAGTTTGCTGTTTTTATCTAGAGTTACTGAGATCATTCCTTCTTTTGCCATAAATTCTTTG
TTTGCTTTAACTCCTATCAAGGCAAGTACGTATTACTGGATAAGCCTTGTGGGCCTGTTACCAGGTATTTTGATCTATGT
TAATGCTGGACATCAAATCACTGAAATTCAAAAACTATCTGATCTTATATCCCCCAAGATCACAATATCTCTAGCGGCAT
TAGGATTCATTCCACTAATCACCAGTGTTTTTTATAAGTATATTTGTAGAAGACTTTTAAGGGGTAGTGATTATGACCAG
TTATCTAAGCAAACAAAATAG

Upstream 100 bases:

>100_bases
AAATCCGTTAAATCGAAGAGTTCAACTATCAACGGAATATAAAAGAGCCTATATTTAAAATTAATGTGCCCTTGTCACGG
GTATGGGAGGTGTTGGTTCT

Downstream 100 bases:

>100_bases
CAGTTTACATCAGAATAGCTTGAAAAAGGGGATTACCACAGGAAGCTGCGCAACAGCTACGGCTAAAGCTGCCCTATTGG
CTGAATATTCGGGGGAATAT

Product: SNARE associated Golgi protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MDKIHPGFKMKSLAQLLFCLLIFSTLYIILFFNSIDLTWFQDNLHILRSYADNNLFLTILIFFIIRFFFAVVSIPGSGVL
TIVAGAIFGFLLASILVTISVSLGVFVVFLISRYALRDYLTRKFSDKLEYVEQVSRDHGASLLFLSRVTEIIPSFAINSL
FALTPIKASTYYWISLVGLLPGILIYVNAGHQITEIQKLSDLISPKITISLAALGFIPLITSVFYKYICRRLLRGSDYDQ
LSKQTK

Sequences:

>Translated_246_residues
MDKIHPGFKMKSLAQLLFCLLIFSTLYIILFFNSIDLTWFQDNLHILRSYADNNLFLTILIFFIIRFFFAVVSIPGSGVL
TIVAGAIFGFLLASILVTISVSLGVFVVFLISRYALRDYLTRKFSDKLEYVEQVSRDHGASLLFLSRVTEIIPSFAINSL
FALTPIKASTYYWISLVGLLPGILIYVNAGHQITEIQKLSDLISPKITISLAALGFIPLITSVFYKYICRRLLRGSDYDQ
LSKQTK
>Mature_246_residues
MDKIHPGFKMKSLAQLLFCLLIFSTLYIILFFNSIDLTWFQDNLHILRSYADNNLFLTILIFFIIRFFFAVVSIPGSGVL
TIVAGAIFGFLLASILVTISVSLGVFVVFLISRYALRDYLTRKFSDKLEYVEQVSRDHGASLLFLSRVTEIIPSFAINSL
FALTPIKASTYYWISLVGLLPGILIYVNAGHQITEIQKLSDLISPKITISLAALGFIPLITSVFYKYICRRLLRGSDYDQ
LSKQTK

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17532687, Length=159, Percent_Identity=25.7861635220126, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI115533280, Length=212, Percent_Identity=24.0566037735849, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 27833; Mature: 27833

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIHPGFKMKSLAQLLFCLLIFSTLYIILFFNSIDLTWFQDNLHILRSYADNNLFLTIL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHH
IFFIIRFFFAVVSIPGSGVLTIVAGAIFGFLLASILVTISVSLGVFVVFLISRYALRDYL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRKFSDKLEYVEQVSRDHGASLLFLSRVTEIIPSFAINSLFALTPIKASTYYWISLVGLL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
PGILIYVNAGHQITEIQKLSDLISPKITISLAALGFIPLITSVFYKYICRRLLRGSDYDQ
HHHHEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LSKQTK
HHCCCC
>Mature Secondary Structure
MDKIHPGFKMKSLAQLLFCLLIFSTLYIILFFNSIDLTWFQDNLHILRSYADNNLFLTIL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHH
IFFIIRFFFAVVSIPGSGVLTIVAGAIFGFLLASILVTISVSLGVFVVFLISRYALRDYL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRKFSDKLEYVEQVSRDHGASLLFLSRVTEIIPSFAINSLFALTPIKASTYYWISLVGLL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
PGILIYVNAGHQITEIQKLSDLISPKITISLAALGFIPLITSVFYKYICRRLLRGSDYDQ
HHHHEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LSKQTK
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]