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The map label for this gene is ygeA [C]

Identifier: 188585267

GI number: 188585267

Start: 653105

End: 653839

Strand: Direct

Name: ygeA [C]

Synonym: Nther_0629

Alternate gene names: 188585267

Gene position: 653105-653839 (Clockwise)

Preceding gene: 188585266

Following gene: 188585268

Centisome position: 20.63

GC content: 38.1

Gene sequence:

>735_bases
ATGGAAAAAAAAGTAGTTGGAGTACTCGGTGGTATGGGACCCCAAGCGACTGTTGATTTTATGGACAAGGTAGTTAAAAA
AACCCCAGCAACCAAGGATCAAGACCATATTAGAATGGTGGTAGATAATAACCCCCAGGTGCCGGATAGAACCAAGGCCA
TCATAGAAGGGGGGGATAACCCAAATACCTATTTACGGGATATGGCTAAAAGGCTTGAAAATATGGGTGCTGATTTTTTG
GTCATGCCTTGTAATACAGCTCATTACTTTTATAAAGATATTCAAGATGTGGTTAATATACCTTTTGTAAACATGCTTGA
ATGTACGGCCAGGTATATAAATAAACTAATAGGGAATGATTCAAAACAGGGTAAAGTAGGACTATTAGCAACTAGCGGAA
CACTTCAAACAGAGATATACCAAAATCAATTATCTCAATTCGGTTTTGAAGTTATTACCCCAGAACCATACCAACAACTT
GTTATGGAAGCGATTTATGCTGTAAAAGCAGGCGATATTGGCACTAGCACCAGAGAACTATTAGAAAAGCCTATTAAACA
ATTAGAAAATAACGGTGCTAAAGCTATCATTATGGGTTGTACGGAAATTCCAGTAATTGCAACGACTGAACAAACTACCC
AAGCAGAATTGATTGATCCTACTGAAGTGCTGGCCGATGAAACTGTTTCTAGAGCCCTGAAAACTGGTGACAAATTGGAA
ATAGGTAAAAATTAA

Upstream 100 bases:

>100_bases
ACTAGCTTTGTTGAGAAATGACTAGTAGGTAGGGAGAGTAACTATTTTTCACATAAAAAATTAAAACAGGAATATAAAGA
CACTAAGGGAGGACGAATTC

Downstream 100 bases:

>100_bases
AAAAATTATAAAATTTTCAGGAGGTGTCTTCATGTCACAAGCACTTGCTTATGTAAATGGGGATTTTGTGGAGCTAGAAA
AGGCAAAAATAGATGCCCTG

Product: aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MEKKVVGVLGGMGPQATVDFMDKVVKKTPATKDQDHIRMVVDNNPQVPDRTKAIIEGGDNPNTYLRDMAKRLENMGADFL
VMPCNTAHYFYKDIQDVVNIPFVNMLECTARYINKLIGNDSKQGKVGLLATSGTLQTEIYQNQLSQFGFEVITPEPYQQL
VMEAIYAVKAGDIGTSTRELLEKPIKQLENNGAKAIIMGCTEIPVIATTEQTTQAELIDPTEVLADETVSRALKTGDKLE
IGKN

Sequences:

>Translated_244_residues
MEKKVVGVLGGMGPQATVDFMDKVVKKTPATKDQDHIRMVVDNNPQVPDRTKAIIEGGDNPNTYLRDMAKRLENMGADFL
VMPCNTAHYFYKDIQDVVNIPFVNMLECTARYINKLIGNDSKQGKVGLLATSGTLQTEIYQNQLSQFGFEVITPEPYQQL
VMEAIYAVKAGDIGTSTRELLEKPIKQLENNGAKAIIMGCTEIPVIATTEQTTQAELIDPTEVLADETVSRALKTGDKLE
IGKN
>Mature_244_residues
MEKKVVGVLGGMGPQATVDFMDKVVKKTPATKDQDHIRMVVDNNPQVPDRTKAIIEGGDNPNTYLRDMAKRLENMGADFL
VMPCNTAHYFYKDIQDVVNIPFVNMLECTARYINKLIGNDSKQGKVGLLATSGTLQTEIYQNQLSQFGFEVITPEPYQQL
VMEAIYAVKAGDIGTSTRELLEKPIKQLENNGAKAIIMGCTEIPVIATTEQTTQAELIDPTEVLADETVSRALKTGDKLE
IGKN

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=238, Percent_Identity=23.5294117647059, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: =5.1.1.13 [H]

Molecular weight: Translated: 26911; Mature: 26911

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKVVGVLGGMGPQATVDFMDKVVKKTPATKDQDHIRMVVDNNPQVPDRTKAIIEGGDN
CCCCCEEHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCC
PNTYLRDMAKRLENMGADFLVMPCNTAHYFYKDIQDVVNIPFVNMLECTARYINKLIGND
CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
SKQGKVGLLATSGTLQTEIYQNQLSQFGFEVITPEPYQQLVMEAIYAVKAGDIGTSTREL
CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHH
LEKPIKQLENNGAKAIIMGCTEIPVIATTEQTTQAELIDPTEVLADETVSRALKTGDKLE
HHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHCCCCEE
IGKN
CCCC
>Mature Secondary Structure
MEKKVVGVLGGMGPQATVDFMDKVVKKTPATKDQDHIRMVVDNNPQVPDRTKAIIEGGDN
CCCCCEEHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCC
PNTYLRDMAKRLENMGADFLVMPCNTAHYFYKDIQDVVNIPFVNMLECTARYINKLIGND
CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
SKQGKVGLLATSGTLQTEIYQNQLSQFGFEVITPEPYQQLVMEAIYAVKAGDIGTSTREL
CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHH
LEKPIKQLENNGAKAIIMGCTEIPVIATTEQTTQAELIDPTEVLADETVSRALKTGDKLE
HHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHCCCCEE
IGKN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2054383; 1907199 [H]