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The map label for this gene is gerKA [H]

Identifier: 188585242

GI number: 188585242

Start: 628462

End: 630066

Strand: Reverse

Name: gerKA [H]

Synonym: Nther_0604

Alternate gene names: 188585242

Gene position: 630066-628462 (Counterclockwise)

Preceding gene: 188585246

Following gene: 188585241

Centisome position: 19.9

GC content: 39.88

Gene sequence:

>1605_bases
ATGAACTTAGAGGACCGCTCCCAGTTTATTAAGGAAAAAACTTTAGATAAAAAAATATATACCAATTTAGATCAGATCAA
ATCATATTTAGGAAGCAGTTACGATTTGCAGATAAAGCAATTCGTAATTGGTCATAAAGAAATTCAAGGAGCTGCAGTGT
TTCTGTCAGGCCTGGAAGATCCCAGGGCTATTGAAAGAATTATTGGAGATCTTACCAGTGAACTTCACAAAGCAAACCTG
ACTCCTGAAAATCCCAAGGAAGCCTTTAATATTGCTCACCGTAAAATCCTTAGCAATGAAGATATGTTGCCCACTGATAA
TTTTGCCGACATTTTTAATAAAATTTTAATCGGTGAAACGGCAATTTTGATAGACGGTGTCTCACAGGCTATACTCTGTG
ACACAAAGGAGTGGGAAACCCGAGGAATCGAAGAGCCTGAAGCAGAAAAAACGATTAGAGGGCCTAGAGAAGGTTTTATA
GAATCTTTAAGAGTGAATACTGGGCTAGTCAGGAGACGGATACGCAGTCCAAATCTGTGGATGGAAAAAGTCACAGTAGG
ACAAGAAGCGGGAAATGAAGTTGCTTTTGCTTACTTAAAGGGGTTAGCCCATGAAGATCTAATAAATGAAGTTAGACACC
GCCTGGAAAATATTGATTTAGATGGAGTTTTAGAAAGCGGATATGTGGAAGAAATGATTGAAGATACCCCTTTTACTTTA
TTCCCTCTAACTCATAGAACGGAACGAGTAGATATAGTGTCGTCAGCTATTCTAGAAGGTAAAGTAGCCATCTTTACCGA
TGGCACTCCTTTTGTAATGATCGTCCCCATCAAATTTTTAGAATTGTTACAAGCACCAGATGATTATCACGAAAAATTCC
CAGTAGGTACCCTAATAAGACTTGGAAGACATATAGGCTTTTTATTTTCAATTTTCTTTCCAGGAGCTTATGTAGCAGTG
ATTAATTTCCATCCTGAACTTCTACCTACTAGTTTAATGCTACAGATAACAGCCGCTCGACAGGGAGTTCCTTTCCCCGC
CGCCATGGAAGTACTATTAATGGAATTTCTATTTGAACTTTTACGTGAAGCAGGCCTTCGCCTGCCTGGCATGATTGGCC
CTGCTTTAGGAATTGTAGGCGCTCTAATTCTCGGGGATGCAGCCATTGGAGCTGGACTGGTTTCACCTGCAGTCGTGGTT
GTTGTCGCTTTAACGGCAATTTCTTCTTTTATAGTTCCAGCTTATTCTCTGGCAATTGCCGGTAGGATAACCCGGTTTAT
CGCAGTCTTATTTGGTTCTGCCTTTGGTTTATTTGGAATTCAATTTGTATTTTTACTTCTGGGACTACATCTGTGTTCAC
TTAGATCTTTTGGTTATCCCTATATGGCCCCCGTTGGACCATTAATTAAGTCTGATTGGAAAGATGCTATTTTAAGAGTA
CCCTGGCCACTACAAAAAACAAGGCCTAAATTAGAAGGTGGAAAAGACCCTTCCAAACAGAAAACCCAATTTCCAAGTCC
ACCCCAAGGCTTAGAAACAAGTGAAGATCAAGATCATGAAGAACAACCTGAAGTAGAAAATGATAGTGATAGCAAGGATA
GTTAG

Upstream 100 bases:

>100_bases
TATTTTTAAATCAGTCCTTGAAAAAATAAAAACTAAGCTTAAGACAAAAAAACAACAAACTTCCGATGGTGAGGTCCTCC
ACCACTGGCTGCGTACTGAT

Downstream 100 bases:

>100_bases
GGGGAAAATTGTGCTGCAAGAAAAAATAGCTAATAGACAATTACTGTTTATGATTTTTCTAGTACGAGCAACAATTGCTA
TAGCATTTTTACCTGTGTTA

Product: GerA spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MNLEDRSQFIKEKTLDKKIYTNLDQIKSYLGSSYDLQIKQFVIGHKEIQGAAVFLSGLEDPRAIERIIGDLTSELHKANL
TPENPKEAFNIAHRKILSNEDMLPTDNFADIFNKILIGETAILIDGVSQAILCDTKEWETRGIEEPEAEKTIRGPREGFI
ESLRVNTGLVRRRIRSPNLWMEKVTVGQEAGNEVAFAYLKGLAHEDLINEVRHRLENIDLDGVLESGYVEEMIEDTPFTL
FPLTHRTERVDIVSSAILEGKVAIFTDGTPFVMIVPIKFLELLQAPDDYHEKFPVGTLIRLGRHIGFLFSIFFPGAYVAV
INFHPELLPTSLMLQITAARQGVPFPAAMEVLLMEFLFELLREAGLRLPGMIGPALGIVGALILGDAAIGAGLVSPAVVV
VVALTAISSFIVPAYSLAIAGRITRFIAVLFGSAFGLFGIQFVFLLLGLHLCSLRSFGYPYMAPVGPLIKSDWKDAILRV
PWPLQKTRPKLEGGKDPSKQKTQFPSPPQGLETSEDQDHEEQPEVENDSDSKDS

Sequences:

>Translated_534_residues
MNLEDRSQFIKEKTLDKKIYTNLDQIKSYLGSSYDLQIKQFVIGHKEIQGAAVFLSGLEDPRAIERIIGDLTSELHKANL
TPENPKEAFNIAHRKILSNEDMLPTDNFADIFNKILIGETAILIDGVSQAILCDTKEWETRGIEEPEAEKTIRGPREGFI
ESLRVNTGLVRRRIRSPNLWMEKVTVGQEAGNEVAFAYLKGLAHEDLINEVRHRLENIDLDGVLESGYVEEMIEDTPFTL
FPLTHRTERVDIVSSAILEGKVAIFTDGTPFVMIVPIKFLELLQAPDDYHEKFPVGTLIRLGRHIGFLFSIFFPGAYVAV
INFHPELLPTSLMLQITAARQGVPFPAAMEVLLMEFLFELLREAGLRLPGMIGPALGIVGALILGDAAIGAGLVSPAVVV
VVALTAISSFIVPAYSLAIAGRITRFIAVLFGSAFGLFGIQFVFLLLGLHLCSLRSFGYPYMAPVGPLIKSDWKDAILRV
PWPLQKTRPKLEGGKDPSKQKTQFPSPPQGLETSEDQDHEEQPEVENDSDSKDS
>Mature_534_residues
MNLEDRSQFIKEKTLDKKIYTNLDQIKSYLGSSYDLQIKQFVIGHKEIQGAAVFLSGLEDPRAIERIIGDLTSELHKANL
TPENPKEAFNIAHRKILSNEDMLPTDNFADIFNKILIGETAILIDGVSQAILCDTKEWETRGIEEPEAEKTIRGPREGFI
ESLRVNTGLVRRRIRSPNLWMEKVTVGQEAGNEVAFAYLKGLAHEDLINEVRHRLENIDLDGVLESGYVEEMIEDTPFTL
FPLTHRTERVDIVSSAILEGKVAIFTDGTPFVMIVPIKFLELLQAPDDYHEKFPVGTLIRLGRHIGFLFSIFFPGAYVAV
INFHPELLPTSLMLQITAARQGVPFPAAMEVLLMEFLFELLREAGLRLPGMIGPALGIVGALILGDAAIGAGLVSPAVVV
VVALTAISSFIVPAYSLAIAGRITRFIAVLFGSAFGLFGIQFVFLLLGLHLCSLRSFGYPYMAPVGPLIKSDWKDAILRV
PWPLQKTRPKLEGGKDPSKQKTQFPSPPQGLETSEDQDHEEQPEVENDSDSKDS

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 59245; Mature: 59245

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEDRSQFIKEKTLDKKIYTNLDQIKSYLGSSYDLQIKQFVIGHKEIQGAAVFLSGLED
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCC
PRAIERIIGDLTSELHKANLTPENPKEAFNIAHRKILSNEDMLPTDNFADIFNKILIGET
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH
AILIDGVSQAILCDTKEWETRGIEEPEAEKTIRGPREGFIESLRVNTGLVRRRIRSPNLW
HHEECCCCHHHEECCCHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
MEKVTVGQEAGNEVAFAYLKGLAHEDLINEVRHRLENIDLDGVLESGYVEEMIEDTPFTL
HHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEE
FPLTHRTERVDIVSSAILEGKVAIFTDGTPFVMIVPIKFLELLQAPDDYHEKFPVGTLIR
EECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHCCCHHHHHCCHHHHHH
LGRHIGFLFSIFFPGAYVAVINFHPELLPTSLMLQITAARQGVPFPAAMEVLLMEFLFEL
HHHHHHHHHHHHCCCEEEEEEECCHHHCCHHHHHEEHHHHCCCCCHHHHHHHHHHHHHHH
LREAGLRLPGMIGPALGIVGALILGDAAIGAGLVSPAVVVVVALTAISSFIVPAYSLAIA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRITRFIAVLFGSAFGLFGIQFVFLLLGLHLCSLRSFGYPYMAPVGPLIKSDWKDAILRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHEEC
PWPLQKTRPKLEGGKDPSKQKTQFPSPPQGLETSEDQDHEEQPEVENDSDSKDS
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNLEDRSQFIKEKTLDKKIYTNLDQIKSYLGSSYDLQIKQFVIGHKEIQGAAVFLSGLED
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCC
PRAIERIIGDLTSELHKANLTPENPKEAFNIAHRKILSNEDMLPTDNFADIFNKILIGET
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH
AILIDGVSQAILCDTKEWETRGIEEPEAEKTIRGPREGFIESLRVNTGLVRRRIRSPNLW
HHEECCCCHHHEECCCHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
MEKVTVGQEAGNEVAFAYLKGLAHEDLINEVRHRLENIDLDGVLESGYVEEMIEDTPFTL
HHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEE
FPLTHRTERVDIVSSAILEGKVAIFTDGTPFVMIVPIKFLELLQAPDDYHEKFPVGTLIR
EECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHCCCHHHHHCCHHHHHH
LGRHIGFLFSIFFPGAYVAVINFHPELLPTSLMLQITAARQGVPFPAAMEVLLMEFLFEL
HHHHHHHHHHHHCCCEEEEEEECCHHHCCHHHHHEEHHHHCCCCCHHHHHHHHHHHHHHH
LREAGLRLPGMIGPALGIVGALILGDAAIGAGLVSPAVVVVVALTAISSFIVPAYSLAIA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRITRFIAVLFGSAFGLFGIQFVFLLLGLHLCSLRSFGYPYMAPVGPLIKSDWKDAILRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHEEC
PWPLQKTRPKLEGGKDPSKQKTQFPSPPQGLETSEDQDHEEQPEVENDSDSKDS
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]