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The map label for this gene is ydeD [H]

Identifier: 188584988

GI number: 188584988

Start: 360510

End: 361439

Strand: Reverse

Name: ydeD [H]

Synonym: Nther_0348

Alternate gene names: 188584988

Gene position: 361439-360510 (Counterclockwise)

Preceding gene: 188584991

Following gene: 188584987

Centisome position: 11.42

GC content: 34.41

Gene sequence:

>930_bases
GTGAGACCTATTGAATTAACATCGGATAAAATTGGTTATGTACTGGTTTTTTTAGGTGCTTCAATGTGGGGAACCACAGG
CACTATCGGAAATCCCATCTTTGAAACTAATCTGGATACAATGCAAATTGTCAGTGCCCAGACTAGTATAGCCGCTTCCA
CCTTGATTGTTTATCTATTTATCACTAAACCAGGTTTATTAAAAATCAAGTTCTCTCACATACCCTTTTTTATTATGTTT
GGCTTAATAACTCAAGTGATCTATGCCTATAGCTATTTCAATGCAATTAGATATATCGGAACTACCGGTGCAGTTATTTT
ATCGTTCACAGCACCTATTTTCGTCTGCCTATATTCAAGATGTTTTTTAGATGAAAAACTAACTAAAGAAAAGATCTTGG
GACTCACTTTTTCTATAATAGGATGTTTTCTAACAGTTGGTGGATTTAATATAGATCAATATGACATAACTCCCTTGGGC
ATAGCTTTTGGTTTAATGACAGGTCTATCCTTTGCTTCATATACTGTGATGGGTAAAATAGCCCTAAGTGATTACTCTTC
TTTAACTGTTACTACTTATTCACTATTTTTTGGTGCTATAACCTTGAGTGTCTTTTACCCACCGGTTGGTGGGTATCTAA
GTGATTTTGATACTACATTATGGTTAAGTATATTAGGACTTGGTCTAATACCAACTGTATTAGCCTTCATTTTTTACACT
AACGGACTTGATAAAATAGAATCAAGTAAAGCAAGTATCATTTCAACTGCAGAAGTGATTTCAGCTACCATCTTAGCTTA
TTTAGTACTAGGAGAGGAATTTACACCTTTAAGAGTGATAGGTATTTTTATGGTAATTATAGGTGTTATCGTTACTAGAA
CCAGTTCAACTAGTTCTTTAAAAGAACTGGTCTCTAAACCTACTCGGTAG

Upstream 100 bases:

>100_bases
AAAATTAGTCCTATCACTAGAATTGTTACTAATCTATAATATCACTAATATCATAGATTTACTCATTTCAATAATCTTAT
AGATTACAAGGGAGTGGAGA

Downstream 100 bases:

>100_bases
TACCCACGAATATATTAGATCATATGTAATCAATAATAAAATAATAGGGACTTGGTAGCGTTTTTCCCCCAGCTTAATTG
GGGCTTTTTATTTCCATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MRPIELTSDKIGYVLVFLGASMWGTTGTIGNPIFETNLDTMQIVSAQTSIAASTLIVYLFITKPGLLKIKFSHIPFFIMF
GLITQVIYAYSYFNAIRYIGTTGAVILSFTAPIFVCLYSRCFLDEKLTKEKILGLTFSIIGCFLTVGGFNIDQYDITPLG
IAFGLMTGLSFASYTVMGKIALSDYSSLTVTTYSLFFGAITLSVFYPPVGGYLSDFDTTLWLSILGLGLIPTVLAFIFYT
NGLDKIESSKASIISTAEVISATILAYLVLGEEFTPLRVIGIFMVIIGVIVTRTSSTSSLKELVSKPTR

Sequences:

>Translated_309_residues
MRPIELTSDKIGYVLVFLGASMWGTTGTIGNPIFETNLDTMQIVSAQTSIAASTLIVYLFITKPGLLKIKFSHIPFFIMF
GLITQVIYAYSYFNAIRYIGTTGAVILSFTAPIFVCLYSRCFLDEKLTKEKILGLTFSIIGCFLTVGGFNIDQYDITPLG
IAFGLMTGLSFASYTVMGKIALSDYSSLTVTTYSLFFGAITLSVFYPPVGGYLSDFDTTLWLSILGLGLIPTVLAFIFYT
NGLDKIESSKASIISTAEVISATILAYLVLGEEFTPLRVIGIFMVIIGVIVTRTSSTSSLKELVSKPTR
>Mature_309_residues
MRPIELTSDKIGYVLVFLGASMWGTTGTIGNPIFETNLDTMQIVSAQTSIAASTLIVYLFITKPGLLKIKFSHIPFFIMF
GLITQVIYAYSYFNAIRYIGTTGAVILSFTAPIFVCLYSRCFLDEKLTKEKILGLTFSIIGCFLTVGGFNIDQYDITPLG
IAFGLMTGLSFASYTVMGKIALSDYSSLTVTTYSLFFGAITLSVFYPPVGGYLSDFDTTLWLSILGLGLIPTVLAFIFYT
NGLDKIESSKASIISTAEVISATILAYLVLGEEFTPLRVIGIFMVIIGVIVTRTSSTSSLKELVSKPTR

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=310, Percent_Identity=24.8387096774194, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33684; Mature: 33684

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPIELTSDKIGYVLVFLGASMWGTTGTIGNPIFETNLDTMQIVSAQTSIAASTLIVYLF
CCCCCCCCCCHHHHHEECCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEE
ITKPGLLKIKFSHIPFFIMFGLITQVIYAYSYFNAIRYIGTTGAVILSFTAPIFVCLYSR
ECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CFLDEKLTKEKILGLTFSIIGCFLTVGGFNIDQYDITPLGIAFGLMTGLSFASYTVMGKI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEE
ALSDYSSLTVTTYSLFFGAITLSVFYPPVGGYLSDFDTTLWLSILGLGLIPTVLAFIFYT
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLDKIESSKASIISTAEVISATILAYLVLGEEFTPLRVIGIFMVIIGVIVTRTSSTSSL
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
KELVSKPTR
HHHHCCCCC
>Mature Secondary Structure
MRPIELTSDKIGYVLVFLGASMWGTTGTIGNPIFETNLDTMQIVSAQTSIAASTLIVYLF
CCCCCCCCCCHHHHHEECCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEE
ITKPGLLKIKFSHIPFFIMFGLITQVIYAYSYFNAIRYIGTTGAVILSFTAPIFVCLYSR
ECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CFLDEKLTKEKILGLTFSIIGCFLTVGGFNIDQYDITPLGIAFGLMTGLSFASYTVMGKI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEE
ALSDYSSLTVTTYSLFFGAITLSVFYPPVGGYLSDFDTTLWLSILGLGLIPTVLAFIFYT
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLDKIESSKASIISTAEVISATILAYLVLGEEFTPLRVIGIFMVIIGVIVTRTSSTSSL
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
KELVSKPTR
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]