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The map label for this gene is yjjW [C]

Identifier: 188584881

GI number: 188584881

Start: 247709

End: 248785

Strand: Direct

Name: yjjW [C]

Synonym: Nther_0239

Alternate gene names: 188584881

Gene position: 247709-248785 (Clockwise)

Preceding gene: 188584880

Following gene: 188584882

Centisome position: 7.83

GC content: 34.91

Gene sequence:

>1077_bases
ATGAAACTGCCTCATAATCTGTTTCGAGATAAAAAGGGTGAATTTGTAAATTGTCATCTTTGTTTTCGTCGGTGCTTGTT
AAAAGAAGGTGAGTTAGGATTTTGTGGCAATCGCAAAGCTGTAAAAAACCTTCAGGGGGAGCTACAGCCTGTCTTTAGAA
CAGTTAAGCGTATTGAAGCTCTAAATATAGATCCGATCGAAAAGAAACCCTTATATCATTTCTATCCTGGAAAAAATGTA
ATTTCCCTTGGATTAAGAGGATGCAATATGAAATGCTTTTATTGTCAAAATTACCAGTTGTCTCAGGATAAAAACTTTGA
TTTTAAAGAGGTCGGAGAGATTAAAAAAGACTTGGAGATTGAGAAAGAGGAAAATCCTCCCCTAGTAGAACAGACAAAAT
CCCTGTTAAAAGAATCCGGAGAAAAACAGAGCAGTGGTGCCATTGGAGTAGCATTTACTTATTCCGAACCAATAACTTGG
TTCGAATTTCTTTATCCTGTTGCTAAAAACACAAAAAAAGAAGGATTTGTAAATGTATTAGTAAGTAATGGTATGGTGAC
AGAAGAAGTGAGATCAGAACTGTCCCCTCTCCTTGATGGTGCTAATATTGATGTTAAATCATTTTCTGAAGAAAATTATC
GCCATTTAGGAGGTTCTTTAACAGCTGTAAAATCAACTGTAGAAGACCTACATGCTAGTGGTATTCACGTCGAATTGACA
TATTTAATTGTACCCGAATTTAATGACAAAGACCAAGAAATAAAAAGTTTTTTAAAGTGGGTTTCTGAAGTTAGCCCTGA
TATTCCGGTACACTTTAGTAGATATTTTCCTAGTTATCAAGCTCAAGCATCTCCTACTCCCGTAGAAAAAATGATTGAAG
TTTACAATATAGCTAAGCAATATATAAATTATGTGTATTTAGGAAACTTGGGTCAGGAAAAGTATCAATCTACTTATTGT
CCTGAATGTGAAGGGGTTGTAATCCGGCGAAGCGTTTTTGCTGTTTCTAATAAACTGAAAGGCGACGAATGTCCTTATTG
TCAGTATAAAATTGCTGGATGTTTTATTTACTATTAA

Upstream 100 bases:

>100_bases
AATACTCCTAAAGAACAATTAGCCATCTCAGCCCAAAAAGCTGGACTATCACCAAGTGATTCAAATTTAACACTTTACAG
GTTTGAGGTGACTAGATTTC

Downstream 100 bases:

>100_bases
CTCTAGATATTTAAAAGGTTTTTTAAGGAATATGTCGAATACTTTGTGAGTAATTATGTAAAACAGATAGATTTAGGATA
AAAATCTTGTATTTTAGAAT

Product: Radical SAM domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKLPHNLFRDKKGEFVNCHLCFRRCLLKEGELGFCGNRKAVKNLQGELQPVFRTVKRIEALNIDPIEKKPLYHFYPGKNV
ISLGLRGCNMKCFYCQNYQLSQDKNFDFKEVGEIKKDLEIEKEENPPLVEQTKSLLKESGEKQSSGAIGVAFTYSEPITW
FEFLYPVAKNTKKEGFVNVLVSNGMVTEEVRSELSPLLDGANIDVKSFSEENYRHLGGSLTAVKSTVEDLHASGIHVELT
YLIVPEFNDKDQEIKSFLKWVSEVSPDIPVHFSRYFPSYQAQASPTPVEKMIEVYNIAKQYINYVYLGNLGQEKYQSTYC
PECEGVVIRRSVFAVSNKLKGDECPYCQYKIAGCFIYY

Sequences:

>Translated_358_residues
MKLPHNLFRDKKGEFVNCHLCFRRCLLKEGELGFCGNRKAVKNLQGELQPVFRTVKRIEALNIDPIEKKPLYHFYPGKNV
ISLGLRGCNMKCFYCQNYQLSQDKNFDFKEVGEIKKDLEIEKEENPPLVEQTKSLLKESGEKQSSGAIGVAFTYSEPITW
FEFLYPVAKNTKKEGFVNVLVSNGMVTEEVRSELSPLLDGANIDVKSFSEENYRHLGGSLTAVKSTVEDLHASGIHVELT
YLIVPEFNDKDQEIKSFLKWVSEVSPDIPVHFSRYFPSYQAQASPTPVEKMIEVYNIAKQYINYVYLGNLGQEKYQSTYC
PECEGVVIRRSVFAVSNKLKGDECPYCQYKIAGCFIYY
>Mature_358_residues
MKLPHNLFRDKKGEFVNCHLCFRRCLLKEGELGFCGNRKAVKNLQGELQPVFRTVKRIEALNIDPIEKKPLYHFYPGKNV
ISLGLRGCNMKCFYCQNYQLSQDKNFDFKEVGEIKKDLEIEKEENPPLVEQTKSLLKESGEKQSSGAIGVAFTYSEPITW
FEFLYPVAKNTKKEGFVNVLVSNGMVTEEVRSELSPLLDGANIDVKSFSEENYRHLGGSLTAVKSTVEDLHASGIHVELT
YLIVPEFNDKDQEIKSFLKWVSEVSPDIPVHFSRYFPSYQAQASPTPVEKMIEVYNIAKQYINYVYLGNLGQEKYQSTYC
PECEGVVIRRSVFAVSNKLKGDECPYCQYKIAGCFIYY

Specific function: Unknown

COG id: COG1180

COG function: function code O; Pyruvate-formate lyase-activating enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR016431
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40990; Mature: 40990

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPHNLFRDKKGEFVNCHLCFRRCLLKEGELGFCGNRKAVKNLQGELQPVFRTVKRIEA
CCCCHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LNIDPIEKKPLYHFYPGKNVISLGLRGCNMKCFYCQNYQLSQDKNFDFKEVGEIKKDLEI
CCCCCCCCCCCEEECCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCC
EKEENPPLVEQTKSLLKESGEKQSSGAIGVAFTYSEPITWFEFLYPVAKNTKKEGFVNVL
CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
VSNGMVTEEVRSELSPLLDGANIDVKSFSEENYRHLGGSLTAVKSTVEDLHASGIHVELT
ECCCCCHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEEE
YLIVPEFNDKDQEIKSFLKWVSEVSPDIPVHFSRYFPSYQAQASPTPVEKMIEVYNIAKQ
EEEEECCCCCHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
YINYVYLGNLGQEKYQSTYCPECEGVVIRRSVFAVSNKLKGDECPYCQYKIAGCFIYY
HHCEEEECCCCHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MKLPHNLFRDKKGEFVNCHLCFRRCLLKEGELGFCGNRKAVKNLQGELQPVFRTVKRIEA
CCCCHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LNIDPIEKKPLYHFYPGKNVISLGLRGCNMKCFYCQNYQLSQDKNFDFKEVGEIKKDLEI
CCCCCCCCCCCEEECCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCC
EKEENPPLVEQTKSLLKESGEKQSSGAIGVAFTYSEPITWFEFLYPVAKNTKKEGFVNVL
CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
VSNGMVTEEVRSELSPLLDGANIDVKSFSEENYRHLGGSLTAVKSTVEDLHASGIHVELT
ECCCCCHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEEE
YLIVPEFNDKDQEIKSFLKWVSEVSPDIPVHFSRYFPSYQAQASPTPVEKMIEVYNIAKQ
EEEEECCCCCHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
YINYVYLGNLGQEKYQSTYCPECEGVVIRRSVFAVSNKLKGDECPYCQYKIAGCFIYY
HHCEEEECCCCHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]