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The map label for this gene is yhaM [H]

Identifier: 188584789

GI number: 188584789

Start: 171689

End: 172723

Strand: Direct

Name: yhaM [H]

Synonym: Nther_0147

Alternate gene names: 188584789

Gene position: 171689-172723 (Clockwise)

Preceding gene: 188584788

Following gene: 188584791

Centisome position: 5.42

GC content: 35.17

Gene sequence:

>1035_bases
ATGAAAAAAGAACAATTTGTAAAAGATATCAATGTTGGAGATAAAATAGATGCTCCTTTTGTAGTCGTTGAAAAAAAGAT
GATGGATTTTAATACCCAGAAAAAAACTGGGGAAAAGTTTATGTTACTGCGCTTACGAGATAATACTGGCACCATTAAGG
CCGTTTTGTGGGAACGGGCTGAACAGACAGCTAATTATGTGCATGAAGATACTATTGTCTGGGTGAAGGGAAAAACTCAG
GAATATAAAGGAGTCCAAATAATAATTGATGAAATCGAAGCTATAGCTGAAGATATTGATCTGACTCCCTTTGTCCCCTC
CAGTTCTATAGGAAGTGAAGAGCTTAAAAAAGAATTACGAAAAACTATCAAAAATATCAATAATAAATACTTGACCGAGC
TACTTAATACAATATTTGAAGATCAAAAACTTCTTAGTTTATATCTCAAGGCCCCAGCAGGCAAGAAAGTGCATCACAAT
TATCTGGGGGGCTTGGCGGAACACAGTTTAGAAGTTATCAAAATAGTTTCATCAATGTATCAGCTGTATCAAGATAGAAT
TAACTGGGATCTTCTTGTTACAGGGAGCTTACTCCATGATATAGGTAAAATTTACGAATATGATTTAAATAGTCCTAGTT
TTCAAATGACTGATAGAGGAAAACTATTGGGACATATTGCATTGGGAGAAGAGTTGATAAGGTCTAAAATTGATAGATTA
TCGTATTTTCCCGAATCACTGGCTGTGGAGATTAGGCATATGATTTTAAGCCATCACGGAGAGAAAGAATGGGGTTCTCC
AGAAGTCCCAAAAACCTTTAACGCTTTATGTTTATTTTATGGAGATCTGATTAGCAGTCGGCTAAATCAGGTTGATAAAT
TGTTTTTTGAGGCTGAGACTGGAGAGCAAGAAGAAAACTTTAATTGGACTAATTTTGATCCTTTAATGGGTAGAGCTTTT
TATTTGCCTCAAGAAGAAACTAGTGAACAGATAGAAGGAAGCCAGCTAAGTCTTGATAATTTAACTGAATCTTAA

Upstream 100 bases:

>100_bases
CAAATGCCCCGTTTTTTATTATTTTATTTTTATTGACTATTTGAAGGAATAGTATTAGTTTTTGTCGAATCATGGTGGAA
GGTCAATGGAGGTGAATCTA

Downstream 100 bases:

>100_bases
AATAAGCTATGTGATAAAATAAAAAAATAACAAAACCCCGCTTTAAAACGGGGTTTTGCTATCTAAAAGTTCATGGTTTT
CTGCGTTAGTATGTTTATTT

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MKKEQFVKDINVGDKIDAPFVVVEKKMMDFNTQKKTGEKFMLLRLRDNTGTIKAVLWERAEQTANYVHEDTIVWVKGKTQ
EYKGVQIIIDEIEAIAEDIDLTPFVPSSSIGSEELKKELRKTIKNINNKYLTELLNTIFEDQKLLSLYLKAPAGKKVHHN
YLGGLAEHSLEVIKIVSSMYQLYQDRINWDLLVTGSLLHDIGKIYEYDLNSPSFQMTDRGKLLGHIALGEELIRSKIDRL
SYFPESLAVEIRHMILSHHGEKEWGSPEVPKTFNALCLFYGDLISSRLNQVDKLFFEAETGEQEENFNWTNFDPLMGRAF
YLPQEETSEQIEGSQLSLDNLTES

Sequences:

>Translated_344_residues
MKKEQFVKDINVGDKIDAPFVVVEKKMMDFNTQKKTGEKFMLLRLRDNTGTIKAVLWERAEQTANYVHEDTIVWVKGKTQ
EYKGVQIIIDEIEAIAEDIDLTPFVPSSSIGSEELKKELRKTIKNINNKYLTELLNTIFEDQKLLSLYLKAPAGKKVHHN
YLGGLAEHSLEVIKIVSSMYQLYQDRINWDLLVTGSLLHDIGKIYEYDLNSPSFQMTDRGKLLGHIALGEELIRSKIDRL
SYFPESLAVEIRHMILSHHGEKEWGSPEVPKTFNALCLFYGDLISSRLNQVDKLFFEAETGEQEENFNWTNFDPLMGRAF
YLPQEETSEQIEGSQLSLDNLTES
>Mature_344_residues
MKKEQFVKDINVGDKIDAPFVVVEKKMMDFNTQKKTGEKFMLLRLRDNTGTIKAVLWERAEQTANYVHEDTIVWVKGKTQ
EYKGVQIIIDEIEAIAEDIDLTPFVPSSSIGSEELKKELRKTIKNINNKYLTELLNTIFEDQKLLSLYLKAPAGKKVHHN
YLGGLAEHSLEVIKIVSSMYQLYQDRINWDLLVTGSLLHDIGKIYEYDLNSPSFQMTDRGKLLGHIALGEELIRSKIDRL
SYFPESLAVEIRHMILSHHGEKEWGSPEVPKTFNALCLFYGDLISSRLNQVDKLFFEAETGEQEENFNWTNFDPLMGRAF
YLPQEETSEQIEGSQLSLDNLTES

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 39588; Mature: 39588

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEQFVKDINVGDKIDAPFVVVEKKMMDFNTQKKTGEKFMLLRLRDNTGTIKAVLWERA
CCHHHHHHHCCCCCCCCCCCCEEHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
EQTANYVHEDTIVWVKGKTQEYKGVQIIIDEIEAIAEDIDLTPFVPSSSIGSEELKKELR
HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
KTIKNINNKYLTELLNTIFEDQKLLSLYLKAPAGKKVHHNYLGGLAEHSLEVIKIVSSMY
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QLYQDRINWDLLVTGSLLHDIGKIYEYDLNSPSFQMTDRGKLLGHIALGEELIRSKIDRL
HHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
SYFPESLAVEIRHMILSHHGEKEWGSPEVPKTFNALCLFYGDLISSRLNQVDKLFFEAET
HHCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GEQEENFNWTNFDPLMGRAFYLPQEETSEQIEGSQLSLDNLTES
CCCCCCCCCCCCCHHHCCEEECCCHHHHHHHCCCCCCHHHCCCC
>Mature Secondary Structure
MKKEQFVKDINVGDKIDAPFVVVEKKMMDFNTQKKTGEKFMLLRLRDNTGTIKAVLWERA
CCHHHHHHHCCCCCCCCCCCCEEHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
EQTANYVHEDTIVWVKGKTQEYKGVQIIIDEIEAIAEDIDLTPFVPSSSIGSEELKKELR
HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
KTIKNINNKYLTELLNTIFEDQKLLSLYLKAPAGKKVHHNYLGGLAEHSLEVIKIVSSMY
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QLYQDRINWDLLVTGSLLHDIGKIYEYDLNSPSFQMTDRGKLLGHIALGEELIRSKIDRL
HHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
SYFPESLAVEIRHMILSHHGEKEWGSPEVPKTFNALCLFYGDLISSRLNQVDKLFFEAET
HHCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GEQEENFNWTNFDPLMGRAFYLPQEETSEQIEGSQLSLDNLTES
CCCCCCCCCCCCCHHHCCEEECCCHHHHHHHCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]