| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is bcgIA [H]
Identifier: 209406225
GI number: 209406225
Start: 1463549
End: 1466224
Strand: Reverse
Name: bcgIA [H]
Synonym: HPSH_07540
Alternate gene names: 209406225
Gene position: 1466224-1463549 (Counterclockwise)
Preceding gene: 188528243
Following gene: 188528242
Centisome position: 91.15
GC content: 37.78
Gene sequence:
>2676_bases ATGCAAGCTTTTCAGTTAGAAGATGATGTTGATGACTATGTTAAAAAAGAATTGGCAAAATTAGGGCTTGTAAAAAATAA GGATTTTAATGTTAAAAGCCAAATGAGTTCTAGCCTTAAAAGCGCCCTTTTGAATGCGAGTAAAACTAAAGACAAAACTT CTTATGGCGAGCCAGATTTTAGTTTAGAAAAATACACGCACCCTAAAAATAAAGAGAGCGTTATCCCTATAATCATAGAA AACAAACTCTACGCTAAAAATTTAAAAAAGCTCAAAAACTCCACGCTGCAAAACGATGACCATTCCATTTCAAAATACGC CGTGAATGGGGCTTTACACTACGCTCAAAATATCCTAAAAAACAAAGAAAAATATAAAGAATGTATCGCCATAGGCATAG CCGGCGATGATGAAGAAAACCTTTCTGTAGAGGTGTATTATGTTTTTGCAAGCGGGATCAATTCGCACAAACTCACTAAC GCTAAAAACCTGCATTTTTTAGAAAATCAAGAATCGTTTAACGCTTTTTATAAAGAATGCACGCTCACTGAAGAAGAAAA GCATTTTATCTTAATCAAAACCAAAGCCGATCTAAACGAAACCGCTAAAAAACTCAACCGCCTTATGCATAACCACAACA TCACAGCGCCTCAGTGCGTGCTATATGTGAGCGGCATGCTTTTATCCATGCAAGAGATTAAAGGCAAAAAAGAGGGCTTA AAACCAAGCGATTTAAAAGGCGAATTGACCGATACTAGCCGTGATGGTGTTTTGGTGTTTAACCAAATTAGCGAATTTTT GAAAACCAAAAACTTGAGCGAAGAAAAACGAGATCTAATGCTCGCCAGTTTTAAAGAAATCAGTAAAGACCCGCAGCGCG ATAAAGAAACGAGCCTTGATAAAGCCATAAGCATGCTTTTAGAAAAAGATTCAAGTATCACTAAGCAAATTTTTACCTTT CTTTATGAATTTGTCCATAAGCCCATTAATGAAAGCGACAATACCGGTCATTTAGACATCATGGGCGAACTTTATAGCGA ATTTTTAAAATACGCTTTAGGGGATGGTAAGGAATTAGGCATTGTTTTAACCCCGCCTTATGTAACTAAAATGATGAGCG AACTTTTAGGGGTTAATGCGAAGTCTTTTGTGATGGATTTAGCCACAGGGAGCGCGGGCTTTTTAATTTCTTCTATGGTG CTAATGATTGAAGACATTGAAAAAACCTATGGTAAAAACACCACTAAAGCTAACGAAAAAATAAAAGACGCAAAAACCAC GCAACTTTTAGGCGTGGAACTTAACGCTGAAATGTTTTCGCTAGCCACCACTAACATGATTTTAAGAGGCGATGGATCAA GTTTGATCATCAAAGGCAACACTTTTGAAACCAATAAAAAGATTTATGAAGATTTTAAACCCAATATCCTTTTATTAAAC CCTCCTTTTAGCTACGAAGAAAACGGCATGCCTTTTATCAAGTTTGGATTAGAATATATGCAAAAAGGCGCTTTAGGAGC GATCATTATCCAAGATAGCGCAGGGAGCGGGCAAGCTTTAAAATCCAATGTTGAAATTTTAAAAAAACATTCGCTTCTAG CGAGCATTAAAATGCCCACCGATTTATTCATGCCTTTAGCCGGGGTGCAAACAAGCGTTTATATTTTTAAAGCCCATGAG CCACACGATTATGAAAAGCCCGTTAAATTCATAGACTTTAGAAACGACGGCTTCAAACGCACCAAAAGAGGCTTGAATGA AACCTCTGACCCCACCAAACGCTACGAAGAAATCATTAAAATTTACAAAGCCGGCTTAAACGCTGAAGTTTCTAAAGAGC TGTGGGGCGATTTAAAAACAATCTATATTGAAGATTTTATCGCTAAGCCGCATGAAAGTAAGCATGCTAAAGACTTTAAT TTTGAAGCCCACCAAAAGAATGACACTAAACCCGAATTAGAGGATTTTAAAAGAACGATAGCCGATTACCTTTCTTATGA AGTGGGCTTGATTTTAAAAAACCAAACGCCCCAAAGTGATTGGCCCCTTAGTAGCCAACTCAACGCTATTAAGTGGGGCG AGTTCAAATTAGGGGATTTGTTTGAAGCGAGTAACGGCGATTTTGACATTCAAAAACGCCACATCAATCATAAGGGCGAA TTTGTCATCACTGCAGGGCTTAGCAATAATGGCGTTTTAGGGCAAAGCGATATAAAAGCAAAAGTTTTTGAAAGCCATAG CATTACTATTGACATGTTTGGTTGCGCGTTTTATCGCAGTTTTCCTTATAAAATGGTAACACACGCTAGGGTATTTTCTC TCAAACCTAAATTTGAAATCAACCATAAAATCGGCTTGTTTTTATCCACGCTATTTTTTGATTACCCTAAAAAATTCGGC TATGAAAACATGTGTTCATGGGCAAAAATTAAAAACGATAAAGTCATTCTACCCCTAAAACCCAGCACTAACACTCAAAC CCTTGAGGATATTGATTTTCATTTCATGGAAAAATTCATAGCCGAACTTGAGCAGTGTCGGCTCGCCGAACTTGAGGCTT ATTTAAAAGCTACAGGGCTATCAAACACCACCCTTTCTAACGATGAAGAAAACGCCCTTAACCTTTTCAATGGCAAAAAT TCTGGGGGGGGGGGGGTAATACCCCATGCAGCTTAA
Upstream 100 bases:
>100_bases TAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTGCAGCGCGGATGAATGAGTTATAATTTTA ATTTTTAAAAGGATAAAACC
Downstream 100 bases:
>100_bases CATGGCAAAGCTTTAGATTAGGGGATTTGTTTGAAGTGTTGTCAAGTAAGAAAATTTATCATGCCAACACGATAAAAATC CATGACACGCAAATAGAAAA
Product: type II restriction modification enzyme methyltransferase
Products: NA
Alternate protein names: Adenine-specific methyltransferase activity [H]
Number of amino acids: Translated: 891; Mature: 891
Protein sequence:
>891_residues MQAFQLEDDVDDYVKKELAKLGLVKNKDFNVKSQMSSSLKSALLNASKTKDKTSYGEPDFSLEKYTHPKNKESVIPIIIE NKLYAKNLKKLKNSTLQNDDHSISKYAVNGALHYAQNILKNKEKYKECIAIGIAGDDEENLSVEVYYVFASGINSHKLTN AKNLHFLENQESFNAFYKECTLTEEEKHFILIKTKADLNETAKKLNRLMHNHNITAPQCVLYVSGMLLSMQEIKGKKEGL KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFTF LYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLATGSAGFLISSMV LMIEDIEKTYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETNKKIYEDFKPNILLLN PPFSYEENGMPFIKFGLEYMQKGALGAIIIQDSAGSGQALKSNVEILKKHSLLASIKMPTDLFMPLAGVQTSVYIFKAHE PHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKAGLNAEVSKELWGDLKTIYIEDFIAKPHESKHAKDFN FEAHQKNDTKPELEDFKRTIADYLSYEVGLILKNQTPQSDWPLSSQLNAIKWGEFKLGDLFEASNGDFDIQKRHINHKGE FVITAGLSNNGVLGQSDIKAKVFESHSITIDMFGCAFYRSFPYKMVTHARVFSLKPKFEINHKIGLFLSTLFFDYPKKFG YENMCSWAKIKNDKVILPLKPSTNTQTLEDIDFHFMEKFIAELEQCRLAELEAYLKATGLSNTTLSNDEENALNLFNGKN SGGGGVIPHAA
Sequences:
>Translated_891_residues MQAFQLEDDVDDYVKKELAKLGLVKNKDFNVKSQMSSSLKSALLNASKTKDKTSYGEPDFSLEKYTHPKNKESVIPIIIE NKLYAKNLKKLKNSTLQNDDHSISKYAVNGALHYAQNILKNKEKYKECIAIGIAGDDEENLSVEVYYVFASGINSHKLTN AKNLHFLENQESFNAFYKECTLTEEEKHFILIKTKADLNETAKKLNRLMHNHNITAPQCVLYVSGMLLSMQEIKGKKEGL KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFTF LYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLATGSAGFLISSMV LMIEDIEKTYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETNKKIYEDFKPNILLLN PPFSYEENGMPFIKFGLEYMQKGALGAIIIQDSAGSGQALKSNVEILKKHSLLASIKMPTDLFMPLAGVQTSVYIFKAHE PHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKAGLNAEVSKELWGDLKTIYIEDFIAKPHESKHAKDFN FEAHQKNDTKPELEDFKRTIADYLSYEVGLILKNQTPQSDWPLSSQLNAIKWGEFKLGDLFEASNGDFDIQKRHINHKGE FVITAGLSNNGVLGQSDIKAKVFESHSITIDMFGCAFYRSFPYKMVTHARVFSLKPKFEINHKIGLFLSTLFFDYPKKFG YENMCSWAKIKNDKVILPLKPSTNTQTLEDIDFHFMEKFIAELEQCRLAELEAYLKATGLSNTTLSNDEENALNLFNGKN SGGGGVIPHAA >Mature_891_residues MQAFQLEDDVDDYVKKELAKLGLVKNKDFNVKSQMSSSLKSALLNASKTKDKTSYGEPDFSLEKYTHPKNKESVIPIIIE NKLYAKNLKKLKNSTLQNDDHSISKYAVNGALHYAQNILKNKEKYKECIAIGIAGDDEENLSVEVYYVFASGINSHKLTN AKNLHFLENQESFNAFYKECTLTEEEKHFILIKTKADLNETAKKLNRLMHNHNITAPQCVLYVSGMLLSMQEIKGKKEGL KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFTF LYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLATGSAGFLISSMV LMIEDIEKTYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETNKKIYEDFKPNILLLN PPFSYEENGMPFIKFGLEYMQKGALGAIIIQDSAGSGQALKSNVEILKKHSLLASIKMPTDLFMPLAGVQTSVYIFKAHE PHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKAGLNAEVSKELWGDLKTIYIEDFIAKPHESKHAKDFN FEAHQKNDTKPELEDFKRTIADYLSYEVGLILKNQTPQSDWPLSSQLNAIKWGEFKLGDLFEASNGDFDIQKRHINHKGE FVITAGLSNNGVLGQSDIKAKVFESHSITIDMFGCAFYRSFPYKMVTHARVFSLKPKFEINHKIGLFLSTLFFDYPKKFG YENMCSWAKIKNDKVILPLKPSTNTQTLEDIDFHFMEKFIAELEQCRLAELEAYLKATGLSNTTLSNDEENALNLFNGKN SGGGGVIPHAA
Specific function: Recognizes the double-stranded sequence 5'-CGAN(6)TGC-3' and cleaves bilaterally and symmetrically outside the sequence to release a 34-base pair fragment. Methylation of the recognition sequence occurs on the adenine in either one or both strands [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 100738; Mature: 100738
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAFQLEDDVDDYVKKELAKLGLVKNKDFNVKSQMSSSLKSALLNASKTKDKTSYGEPDF CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SLEKYTHPKNKESVIPIIIENKLYAKNLKKLKNSTLQNDDHSISKYAVNGALHYAQNILK CHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH NKEKYKECIAIGIAGDDEENLSVEVYYVFASGINSHKLTNAKNLHFLENQESFNAFYKEC CHHHHHHHEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHC TLTEEEKHFILIKTKADLNETAKKLNRLMHNHNITAPQCVLYVSGMLLSMQEIKGKKEGL CCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHCCC KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLD CCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH KAISMLLEKDSSITKQIFTFLYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELG HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEE IVLTPPYVTKMMSELLGVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEK EEECCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH IKDAKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETNKKIYEDFKPNILLLN HHHCCHHEEEEEEECCHHHHHEECCEEEEECCCEEEEECCCCCCCHHHHHHCCCCEEEEC PPFSYEENGMPFIKFGLEYMQKGALGAIIIQDSAGSGQALKSNVEILKKHSLLASIKMPT CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCH DLFMPLAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIK HHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHH IYKAGLNAEVSKELWGDLKTIYIEDFIAKPHESKHAKDFNFEAHQKNDTKPELEDFKRTI HHHHCCCCHHHHHHHCCHHHEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH ADYLSYEVGLILKNQTPQSDWPLSSQLNAIKWGEFKLGDLFEASNGDFDIQKRHINHKGE HHHHHHEEEEEEECCCCCCCCCCHHCCCCEECCCEECCCCEECCCCCCEEEHHHCCCCCC FVITAGLSNNGVLGQSDIKAKVFESHSITIDMFGCAFYRSFPYKMVTHARVFSLKPKFEI EEEEECCCCCCCCCCCCCCCEEECCCCEEEEEHHHHHHHCCCHHHHHHHHEEECCCCEEE NHKIGLFLSTLFFDYPKKFGYENMCSWAKIKNDKVILPLKPSTNTQTLEDIDFHFMEKFI CCHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCEEEEEECCCCCCCHHHHHHHHHHHHHH AELEQCRLAELEAYLKATGLSNTTLSNDEENALNLFNGKNSGGGGVIPHAA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC >Mature Secondary Structure MQAFQLEDDVDDYVKKELAKLGLVKNKDFNVKSQMSSSLKSALLNASKTKDKTSYGEPDF CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SLEKYTHPKNKESVIPIIIENKLYAKNLKKLKNSTLQNDDHSISKYAVNGALHYAQNILK CHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH NKEKYKECIAIGIAGDDEENLSVEVYYVFASGINSHKLTNAKNLHFLENQESFNAFYKEC CHHHHHHHEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHC TLTEEEKHFILIKTKADLNETAKKLNRLMHNHNITAPQCVLYVSGMLLSMQEIKGKKEGL CCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHCCC KPSDLKGELTDTSRDGVLVFNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLD CCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH KAISMLLEKDSSITKQIFTFLYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELG HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEE IVLTPPYVTKMMSELLGVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEK EEECCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH IKDAKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETNKKIYEDFKPNILLLN HHHCCHHEEEEEEECCHHHHHEECCEEEEECCCEEEEECCCCCCCHHHHHHCCCCEEEEC PPFSYEENGMPFIKFGLEYMQKGALGAIIIQDSAGSGQALKSNVEILKKHSLLASIKMPT CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCH DLFMPLAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIK HHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHH IYKAGLNAEVSKELWGDLKTIYIEDFIAKPHESKHAKDFNFEAHQKNDTKPELEDFKRTI HHHHCCCCHHHHHHHCCHHHEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH ADYLSYEVGLILKNQTPQSDWPLSSQLNAIKWGEFKLGDLFEASNGDFDIQKRHINHKGE HHHHHHEEEEEEECCCCCCCCCCHHCCCCEECCCEECCCCEECCCCCCEEEHHHCCCCCC FVITAGLSNNGVLGQSDIKAKVFESHSITIDMFGCAFYRSFPYKMVTHARVFSLKPKFEI EEEEECCCCCCCCCCCCCCCEEECCCCEEEEEHHHHHHHCCCHHHHHHHHEEECCCCEEE NHKIGLFLSTLFFDYPKKFGYENMCSWAKIKNDKVILPLKPSTNTQTLEDIDFHFMEKFI CCHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCEEEEEECCCCCCCHHHHHHHHHHHHHH AELEQCRLAELEAYLKATGLSNTTLSNDEENALNLFNGKNSGGGGVIPHAA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8451198; 8276869 [H]