| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is flgG
Identifier: 188528376
GI number: 188528376
Start: 1605142
End: 1605930
Strand: Direct
Name: flgG
Synonym: HPSH_08250
Alternate gene names: 188528376
Gene position: 1605142-1605930 (Clockwise)
Preceding gene: 188528375
Following gene: NA
Centisome position: 99.79
GC content: 47.02
Gene sequence:
>789_bases ATGCTCCGCTCTCTCTATAGCGCCACTTCAGGGATGCTCGCCCAACAAACGCACATTGACACCACTTCAAACAATATCGC CAATGTCAATACCACCGGGTTTAAAAAATCTCGTGCGGATTTTAACGACTTGTTTTACCAAGCGATGCAATACGCTGGCA CCAACACAAGCAACACGACTTTATCGCCTGATGGCATGGAGGTGGGCTTGGGCGTGCGCCCTAGTGCGATCACTAAAATG TTTTCGCAAGGCAGCCCTAAAGAAACGGAAAATAATTTAGATGTCGCCATTACGGGTAAAGGCTTTTTTCAAGTCCAGTT GCCTGATGGCACCACTGCTTATACAAGAAGCGGGAATTTTAAGCTAGACGAACAGGGTAATCTTGTAACAAGCGAGGGCT ATCTTTTGATCCCTCAAATCACTTTACCTGAAGACACCACGCAAGTGAATATCGGTGTGGATGGCACGGTGAGCGTGACT CAAGGCTTGCAAACGACTTCTAATGTGATCGGGCAGATCACGCTGGCTAATTTTGTCAATCCGGCGGGGCTTCATTCTAT GGGGGATAATTTGTTTTCAATCACCAACGCTAGCGGTGAGGCGATTGTGGGCAACCCGGATTCTCAAGGATTGGGCAAGT TAAGGCAAGGCTTTTTGGAATTGAGCAATGTGAGATTGGTAGAAGAAATGACGGATCTAATCACCGCTCAAAGGGCTTAT GAAGCCAATTCTAAAAGCATTCAAACCGCTGATGCCATGCTCCAGACGGTCAATTCCCTCAAACGATAA
Upstream 100 bases:
>100_bases TAAAAAAGAGAGCGTTAAAACAACGCTTCAATTTTAGTCAAATTTAATCTTGTTTTGGTTATAATTCTAGGTTATTAAGT TTTAGTTTAAAGGGAAAATC
Downstream 100 bases:
>100_bases TTGGAACGGTTGTTGCCATTCTTTAATTCTTGTGGCTAGGGTTTTTAAGTTCTTTGAACACCGCTTTCTTGGCTATTGCT TGCGTTGTTGTTTGGTTGGT
Product: flagellar basal body rod protein FlgG
Products: NA
Alternate protein names: Distal rod protein [H]
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGVRPSAITKM FSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVT QGLQTTSNVIGQITLANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAY EANSKSIQTADAMLQTVNSLKR
Sequences:
>Translated_262_residues MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGVRPSAITKM FSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVT QGLQTTSNVIGQITLANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAY EANSKSIQTADAMLQTVNSLKR >Mature_262_residues MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGVRPSAITKM FSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVT QGLQTTSNVIGQITLANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAY EANSKSIQTADAMLQTVNSLKR
Specific function: Unknown
COG id: COG4786
COG function: function code N; Flagellar basal body rod protein
Gene ontology:
Cell location: Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787318, Length=260, Percent_Identity=47.3076923076923, Blast_Score=248, Evalue=4e-67, Organism=Escherichia coli, GI1787316, Length=119, Percent_Identity=42.0168067226891, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787317, Length=261, Percent_Identity=30.6513409961686, Blast_Score=71, Evalue=6e-14,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR019776 - InterPro: IPR020013 - InterPro: IPR012834 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 28076; Mature: 28076
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00588 FLAGELLA_BB_ROD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT CCCHHHHHHCCCHHHHEECCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCE LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNF ECCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCE KLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVN EECCCCCEEECCCEEEEEEEECCCCCCEEEECCCCEEHHHHCHHHHHHHHHEEHHHHHCC PAGLHSMGDNLFSITNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAY CCHHHHHCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EANSKSIQTADAMLQTVNSLKR CCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT CCCHHHHHHCCCHHHHEECCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCE LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNF ECCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCE KLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVN EECCCCCEEECCCEEEEEEEECCCCCCEEEECCCCEEHHHHCHHHHHHHHHEEHHHHHCC PAGLHSMGDNLFSITNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAY CCHHHHHCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EANSKSIQTADAMLQTVNSLKR CCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9403685 [H]