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The map label for this gene is rlpA [C]

Identifier: 188528363

GI number: 188528363

Start: 1594249

End: 1595196

Strand: Reverse

Name: rlpA [C]

Synonym: HPSH_08185

Alternate gene names: 188528363

Gene position: 1595196-1594249 (Counterclockwise)

Preceding gene: 188528364

Following gene: 188528362

Centisome position: 99.17

GC content: 42.19

Gene sequence:

>948_bases
ATGGGTTTGGCGTTGGAAAAAGCTTGTTTTTTAGGCGTTATTTTTTTGATTAGTGCTTGCGCGGTTAAAAAAGAGGGGGT
AAAGAATTTGTCTTACAAGCATGAAAGCTTGCGCGCTTATGAAAACGCTAAAGACTATGATCCGACAACCAAAAAAGCCA
CCTATAAACGCAATTTTTTTGAACGCCATTTCAAACACCACTCCAATTCGCAAGATAGCAACACAAAAGATCAGCCACTA
GATAACGGCATGCGCGATTCTAGCACGATCCAAAGAGCCACCATGCGCCCTTATCAAGTGGGGAACAAGTGGTATTACCC
CACTAAAGTGGATTTGGGCGAAAAATTTGATGGCATTGCGAGCTGGTATGGCCCCAATTTCCATGCCAAAAAAACCAGTA
ATGGGGAAATTTATAACATGTATGCCCACACCGCCGCGCACAAGACTTTACCCATGAACACCGTGGTGAAAGTCATCAAT
GTTGAAAACAATTTAAGCACCATTGTGCGCATCAACGATAGAGGGCCTTTTGTGAGCGATCGCATCATTGATTTGTCTAA
TGCGGCCGCTAGGGATATTGATATGGTTAAAAAAGGCACAGCCAGCGTGCGTCTTATTGTTTTGGGTTTTGGTGGGGTTA
TCTCCAAGCAATACGAGCAATCCTTTAACGCTAGCTCTTCAAAGATCTTGCACAAGGAATTTAAAGTCGGCGAGAGCGAA
AACAGCGTGAGCGGAGGGAAATTTTCCTTGCAAATGGGGGCTTTTAGAAACCAAATAGGCGCTCAAACTTTAGCGGATAA
ATTGCAAGCAGAAAATCCAAATTACAGCGTTAAGATCGCTTTTAAAGACGATTTGTATAAAGTTTTAGTTCAAGGGTTTC
AAAGCGAAGAAGAGGCTAGGGATTTTATGAAAAAATATAACCAGAATGCGGTTTTAACCAGAGAATGA

Upstream 100 bases:

>100_bases
GTATCCAATTAGCCAATAACCTCAAAGATTCTAACATTTTTATCCACCAGCGCTTAATCATCCCCACCAATAAGAAATTA
CTCGCTACAAGGGAATTTTA

Downstream 100 bases:

>100_bases
TTAAGTTATTGCTTTTAGATGTGGATGGCACGCTCACAGACGGATCGTTGTATTTTGATGAAAATTTTCACGAGATGAAG
GCTTTTAATGTCAAAGACGG

Product: rare lipoprotein A (rlpA)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGLALEKACFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKATYKRNFFERHFKHHSNSQDSNTKDQPL
DNGMRDSSTIQRATMRPYQVGNKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVIN
VENNLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASSSKILHKEFKVGESE
NSVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKIAFKDDLYKVLVQGFQSEEEARDFMKKYNQNAVLTRE

Sequences:

>Translated_315_residues
MGLALEKACFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKATYKRNFFERHFKHHSNSQDSNTKDQPL
DNGMRDSSTIQRATMRPYQVGNKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVIN
VENNLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASSSKILHKEFKVGESE
NSVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKIAFKDDLYKVLVQGFQSEEEARDFMKKYNQNAVLTRE
>Mature_314_residues
GLALEKACFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKATYKRNFFERHFKHHSNSQDSNTKDQPLD
NGMRDSSTIQRATMRPYQVGNKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINV
ENNLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASSSKILHKEFKVGESEN
SVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKIAFKDDLYKVLVQGFQSEEEARDFMKKYNQNAVLTRE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=73, Percent_Identity=42.4657534246575, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 35529; Mature: 35397

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLALEKACFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKATYKRNFF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
ERHFKHHSNSQDSNTKDQPLDNGMRDSSTIQRATMRPYQVGNKWYYPTKVDLGEKFDGIA
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCEEECCCCCCCCCHHHHHH
SWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINVENNLSTIVRINDRGPFVSD
HHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHEEEEECCCCCEEEEEECCCCCCCCC
RIIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASSSKILHKEFKVGESE
CEEECCCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
NSVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKIAFKDDLYKVLVQGFQSEEEAR
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHH
DFMKKYNQNAVLTRE
HHHHHHCCCCEEECC
>Mature Secondary Structure 
GLALEKACFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKATYKRNFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
ERHFKHHSNSQDSNTKDQPLDNGMRDSSTIQRATMRPYQVGNKWYYPTKVDLGEKFDGIA
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCEEECCCCCCCCCHHHHHH
SWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINVENNLSTIVRINDRGPFVSD
HHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHEEEEECCCCCEEEEEECCCCCCCCC
RIIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASSSKILHKEFKVGESE
CEEECCCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
NSVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKIAFKDDLYKVLVQGFQSEEEAR
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHH
DFMKKYNQNAVLTRE
HHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]