Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188528326

Identifier: 188528326

GI number: 188528326

Start: 1556175

End: 1557071

Strand: Direct

Name: 188528326

Synonym: HPSH_07990

Alternate gene names: NA

Gene position: 1556175-1557071 (Clockwise)

Preceding gene: 188528325

Following gene: 188528327

Centisome position: 96.74

GC content: 35.23

Gene sequence:

>897_bases
ATGGTTAGTAACACTACCTTGCAAAAGAATTTAGACGCTTTTTACACCCACCCCAAAATCGCGCGATTTTGTTTGGATTT
ATTAAAAGATCTCATCAATCAAAATCTAGGGCTAGGCTTAAATGCATTCCATTTTTTAGAGCCAAGTGCAGGGAGTGGGA
GCTTTGTTGGCGCGTTAAAAGGATTAGGGATTGCTGATTGTCTCGCCCTTGATATTGCCCCTAAAGCTCAAGGCATTCAA
CAAAAAGATTATTTGTTGGAATTGATTGAGTTTAACAAAAAGCGTGTCATTATTGGCAACCCTCCTTTTGGGCACAGAGG
GAAATTAGCCCTAGATTTTTTAAACAAATCTTTGAATGAAGCGCCTATTGTAGCGTTTATTTTGCCCAATTTATTCAAAC
GCTATTCTGTTCAAAAACACATTGATAAGCGTGCAAAATTGGTTTTAAACGCTGATTTAGAAAAAAACGCTTTTATTTTT
AATGAACGACCCTATGATGTGAAATGCGTTTTTCAAATCTATATGCATAAAAATATCGCCCTAAATCTTAAAGACGAACG
GATCGTTGCACCCCCAAAAATCCGCCATAATGACTTCATTACTTATATTCATAACAACACGCCACACACCCTTAAATATT
TCAACAAAGAAAAATACCAATGGGATTTTGCGGTGGTAAGGCAAGGCTTTTATGATTACAACGAAAAGATCACCAATGCA
AATTTACTGATTAAAAACCGACAATATTTTTTTGTTAAAGCCCACTCTAAAGAAGCTTTAAGGATTATCCATAAAATTGA
TTTTAACAAACTCGCTCATAAAAACACGCAAGTTTTAGGGTTTTCTACTTATGATTTTGTGGAAGAATATTGCAAATTAA
AGGAAATGCATGCTTGA

Upstream 100 bases:

>100_bases
TTTGAATTGCGAGATCCGCAACAGCTATGTGAATGCGGCTTATGAGAGCATGAGTTTAGGCGAAGCGGGCGGGTTTGATT
TCAATTAAAATGGGCTTAAA

Downstream 100 bases:

>100_bases
AAAAGTGTTTCAAGAAATTACCAATAAAAGAAAGTTTTTTGCAAGTTCTAGCACAGGGGAGCAGTTTGAAAACAATTTTA
GGAATGAATTAAAAAAACAC

Product: putative type II methylase protein

Products: NA

Alternate protein names: Type II R-M System Methyltransferase; Methyltransferase

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALKGLGIADCLALDIAPKAQGIQ
QKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNEAPIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIF
NERPYDVKCVFQIYMHKNIALNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA
NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA

Sequences:

>Translated_298_residues
MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALKGLGIADCLALDIAPKAQGIQ
QKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNEAPIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIF
NERPYDVKCVFQIYMHKNIALNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA
NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA
>Mature_298_residues
MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALKGLGIADCLALDIAPKAQGIQ
QKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNEAPIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIF
NERPYDVKCVFQIYMHKNIALNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA
NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34491; Mature: 34491

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALK
CCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
GLGIADCLALDIAPKAQGIQQKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNE
CCCHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCC
APIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIFNERPYDVKCVFQIYMHKNIA
CCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCEE
LNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA
EEECCCEEECCCCCCCCCEEEEEECCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCC
NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA
EEEEECCEEEEEEECCHHHHHHHHHHCHHHHHCCCCEEEEECHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVSNTTLQKNLDAFYTHPKIARFCLDLLKDLINQNLGLGLNAFHFLEPSAGSGSFVGALK
CCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHH
GLGIADCLALDIAPKAQGIQQKDYLLELIEFNKKRVIIGNPPFGHRGKLALDFLNKSLNE
CCCHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCC
APIVAFILPNLFKRYSVQKHIDKRAKLVLNADLEKNAFIFNERPYDVKCVFQIYMHKNIA
CCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCEE
LNLKDERIVAPPKIRHNDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNA
EEECCCEEECCCCCCCCCEEEEEECCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCC
NLLIKNRQYFFVKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA
EEEEECCEEEEEEECCHHHHHHHHHHCHHHHHCCCCEEEEECHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA