Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188528281

Identifier: 188528281

GI number: 188528281

Start: 1503392

End: 1503718

Strand: Direct

Name: 188528281

Synonym: HPSH_07755

Alternate gene names: NA

Gene position: 1503392-1503718 (Clockwise)

Preceding gene: 188528280

Following gene: 188528282

Centisome position: 93.46

GC content: 38.23

Gene sequence:

>327_bases
ATGAAAACGATCTTTAGCTTCTTTTTCCTTCTTATTGTTTTAAAAGCAAACCCCATAAACCCTTTATTAGAGCCGTTATA
TTTCCCAAATTACGCGCAATTTTTAAATTTAGAACCTCATTTTGTCATTAAAAAAAAGCGCACTTATAGACCCTTCCAAT
GGGGGAATACCATCATCATCAAACGCCATGACTTAGAAGAACGCCAAAGCAACCAGCCAAGCGATATTTTCCGCCAAAAC
GCCGAAATCAATGTGTCTTCTCAAACTTTTTTAAGGGGCATGAGCAGCGCTTCTTCACGAATAGTGATCGATTCAGTCGT
TCAGTAA

Upstream 100 bases:

>100_bases
TTAAAAACGCGCTATAGTGAAATCTCTGAGCTTCATTTAAAAATCAGCAAGTTAGAAATTTCTCCAAATTCTCAAGTGGG
AGCGAGCGTGAAAATTCGCT

Downstream 100 bases:

>100_bases
AATGTTAAAACTTTTTTAATCACATTTTTCTTGGTATTTTCTTAATCCTAAAACAAATTTAAGGTATTATTAAATAGAAT
AATGTAATAATAACTTTAGG

Product: FrpB-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN
AEINVSSQTFLRGMSSASSRIVIDSVVQ

Sequences:

>Translated_108_residues
MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN
AEINVSSQTFLRGMSSASSRIVIDSVVQ
>Mature_108_residues
MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQN
AEINVSSQTFLRGMSSASSRIVIDSVVQ

Specific function: Unknown

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12690; Mature: 12690

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIII
CHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCCCCEEEECCCCCCCCCCCCEEEE
KRHDLEERQSNQPSDIFRQNAEINVSSQTFLRGMSSASSRIVIDSVVQ
ECCCCHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEHECCC
>Mature Secondary Structure
MKTIFSFFFLLIVLKANPINPLLEPLYFPNYAQFLNLEPHFVIKKKRTYRPFQWGNTIII
CHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCCCCEEEECCCCCCCCCCCCEEEE
KRHDLEERQSNQPSDIFRQNAEINVSSQTFLRGMSSASSRIVIDSVVQ
ECCCCHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEHECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA