| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528277
Identifier: 188528277
GI number: 188528277
Start: 1499753
End: 1500904
Strand: Direct
Name: 188528277
Synonym: HPSH_07735
Alternate gene names: NA
Gene position: 1499753-1500904 (Clockwise)
Preceding gene: 188528272
Following gene: 188528279
Centisome position: 93.24
GC content: 41.93
Gene sequence:
>1152_bases GTGCACAAAATGGGCATGAACAGAGATGTGTTTAAAAATATCATTTTAGCGAGCAGGAGCTTGGACAAATGCTATGCGAT TAAAGAAAGCATGCTCAAAAAGGGTTTGGGGGAAATCAGCGTTGAGCAAGTGGATGCAGATGATACGCAAGCCTTAGTCG CTTTAATCAAAAAATACAAGCCTAAAGTCGTTGTTAATGTGGCTTTACCCTATCAGGATTTAACGATCATGCAAGCATGT TTAGAAACTAAAACGCATTACATTGACACCGCCAATTACGAACACCCAGATTTAGCGAAGTTTGAATACAAAGAGCAATG GGCGTTTGATAAGGCTTATAAAGAAGTAGGGATTTTAGGGGTTTTAGGGGCTGGGTTTGATCCGGGCGTGACTAACGCTT ATGTCGCTCACGCTCAAAAACACCATTTTGACACTATCCACACTTTAGATATTTTAGATTGCAACGCTGGGGACCACAAA CGCCCTTTTGCGACGAATTTTAACCCTGAAATCAATTTGAGGGAAGTCAGCTCTAAAGGGCGTTATTATGAAAATGGCAA ATGGATTGAAACAAAGCCTTTAGAAATCAAGCAAGTGTGGGCTTACCCACAGATTGGCGAAATGGATTCGTATCTTTTAT ACCATGAAGAATTGGAATCGTTAGTCAAAAACATTAAAGGCTTGAGGAGGGCGAGGTTTTTTATGACTTTCTCTCAAAAT TATTTAACCCACATGAAATGCTTAGAAAATGTCGGCATGCTAGGCATTAAAGAAATAGAGCATCAAGGCGCAAAAATCGT GCCGATACAATTTTTAAAAACCCTGCTTCCCGATCCAGCAACTCTAGCCAAAGACACCACCGGCAAAACCAATATCGGGT GCTATATGACTGGCATTAAAAACAACCAAGACAAAACGCTCTACATTTACAATGTGTGCGATCACAAGAAATGCTATGAA GAAGTGGGTTCGCAAGCCATAAGCTACACCACCGGCGTGCCAGCGATGTGCGCGGCTAAAATGATTTGCAATGACACTTG GAGCGCGGATCATTTTAGGGCCGGGGTGTTTAACATAGAAGAATTAAACACCGATCCCTTCATGGAAGAATTGGTTAGGC AAGGCTTGCCTTATGAAGTGATTGAGCGCTAG
Upstream 100 bases:
>100_bases ATAATATAATACCCCCCTAAAAGAACGAGATTAGTTAGAAAGTAGGTGTTCCTTGCATACAGTATTACAAATTGGAGCTG GTGGCGTAGGCAGTGTGGTA
Downstream 100 bases:
>100_bases TTTTAGGCTTCAATCCTCACTTGGCGCAATAAACACCGATTCCCTTTCTATCGTAATATCCTTATCATCCGTGCTATAAG CTTGTATTGTAATGGGGATG
Product: conserved hypothetical ATP-binding protein
Products: NA
Alternate protein names: Carboxynorspermidine Dehydrogenase; Saccharopine Dehydrogenase-Like Protein; Carboxynorspermide Hydratase; Saccharopine Dehydrogenase Family Protein; Acyl Carrier Protein
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEISVEQVDADDTQALVALIKKYKPKVVVNVALPYQDLTIMQAC LETKTHYIDTANYEHPDLAKFEYKEQWAFDKAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHK RPFATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFSQN YLTHMKCLENVGMLGIKEIEHQGAKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYE EVGSQAISYTTGVPAMCAAKMICNDTWSADHFRAGVFNIEELNTDPFMEELVRQGLPYEVIER
Sequences:
>Translated_383_residues MHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEISVEQVDADDTQALVALIKKYKPKVVVNVALPYQDLTIMQAC LETKTHYIDTANYEHPDLAKFEYKEQWAFDKAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHK RPFATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFSQN YLTHMKCLENVGMLGIKEIEHQGAKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYE EVGSQAISYTTGVPAMCAAKMICNDTWSADHFRAGVFNIEELNTDPFMEELVRQGLPYEVIER >Mature_383_residues MHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEISVEQVDADDTQALVALIKKYKPKVVVNVALPYQDLTIMQAC LETKTHYIDTANYEHPDLAKFEYKEQWAFDKAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHK RPFATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFSQN YLTHMKCLENVGMLGIKEIEHQGAKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYE EVGSQAISYTTGVPAMCAAKMICNDTWSADHFRAGVFNIEELNTDPFMEELVRQGLPYEVIER
Specific function: Unknown
COG id: COG1748
COG function: function code E; Saccharopine dehydrogenase and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43679; Mature: 43679
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEISVEQVDADDTQALVALIKKYK CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCC PKVVVNVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDKAYKEVGILG CEEEEEEECCCHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEE VLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSSKG EECCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCC RYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFSQN CEECCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLTHMKCLENVGMLGIKEIEHQGAKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIK HHHHHHHHHHCCCCCHHHHHHCCCEEEHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCC NNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRAGVFNIE CCCCCEEEEEECCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCCCCCHHHCCCEEHH ELNTDPFMEELVRQGLPYEVIER HCCCCHHHHHHHHCCCCHHHHCC >Mature Secondary Structure MHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEISVEQVDADDTQALVALIKKYK CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCC PKVVVNVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDKAYKEVGILG CEEEEEEECCCHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEE VLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSSKG EECCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCC RYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFSQN CEECCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLTHMKCLENVGMLGIKEIEHQGAKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIK HHHHHHHHHHCCCCCHHHHHHCCCEEEHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCC NNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRAGVFNIE CCCCCEEEEEECCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCCCCCHHHCCCEEHH ELNTDPFMEELVRQGLPYEVIER HCCCCHHHHHHHHCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA