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The map label for this gene is yfiC [C]

Identifier: 188528274

GI number: 188528274

Start: 1496664

End: 1497380

Strand: Reverse

Name: yfiC [C]

Synonym: HPSH_07720

Alternate gene names: 188528274

Gene position: 1497380-1496664 (Counterclockwise)

Preceding gene: 188528275

Following gene: 188528273

Centisome position: 93.09

GC content: 38.63

Gene sequence:

>717_bases
ATGGATAGAAAACTCTTAAGATTATACCAGCCTTTAAACGCTTATTCTTACAATAGCGATTCGCTTTTTTTATACGATTT
TTCACGCCCTTTTATCAAAAATAGCGGCGCGATTTTAGACATAGGCTCAGGGTGTGGGGTTTTAGGCTTACTCTGCGCTA
GAGATAACCCGCTAGCGAGCGTTCATTTAGTGGAAAAGGATGGCAAAATGGCGTTTTGCTCCCAAAAAAACGCCCTTAAA
TTCCCCAACGCTCAAGTGTTTGAAAGCGATTTTTTAGATTTCAACCCCCCGATTTTGTATGATGCGATTGTGTGCAACCC
TCCTTTTTATGCCTTAGGCTCTATCAAATCTAAAATTAAAGGGCATGCGAGGCACCAGAGCGAATTAGATTTTGCTTCTT
TAGCGGCTAAAGTGAAAAAATGCCTAAAACCTAAAGGGTATTTTATTTTTTGCTATGAAGCCTTGTCGCTTTGCTTGGTC
ATAGAGAGTTTAAAAAGCGCTAAACTCACGCTAGAAACTTTAAGGTTTGTCCAAAGTTTTAAAGATAAAAACGCCCATTT
GATGCTTGGAGCGGCTAGGAATAATTCTAAAAGCGCTCTAAAAGTTTTGCCCCCTTTAATCACGCATCATTCCAAAAACC
AAAGCGACAACACCAAAGAAGTTCTAAGTATCTATCAAATTTGTAACACTTATTCTATCAAAGCGCTTTTAAATTAG

Upstream 100 bases:

>100_bases
ATGCGTCTATGATTAGCGAAGCGTTTAGCGCACTCGCTCTAAAAACCCCTTTTAAAGGGCGGTTGTTGCATGCGCAAATC
TTAGAAAATGAAGCCCTTTT

Downstream 100 bases:

>100_bases
CGTCTCATCAATTAAGGATTAAGACATGAAATGTTCGCATTGCCAGTTGGAGTTTAAAGAAAGTGAGCTTTTTAAAGAGG
TGATCAATCATAAAGAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: tRNA m6A37 methyltransferase [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGVLGLLCARDNPLASVHLVEKDGKMAFCSQKNALK
FPNAQVFESDFLDFNPPILYDAIVCNPPFYALGSIKSKIKGHARHQSELDFASLAAKVKKCLKPKGYFIFCYEALSLCLV
IESLKSAKLTLETLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQICNTYSIKALLN

Sequences:

>Translated_238_residues
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGVLGLLCARDNPLASVHLVEKDGKMAFCSQKNALK
FPNAQVFESDFLDFNPPILYDAIVCNPPFYALGSIKSKIKGHARHQSELDFASLAAKVKKCLKPKGYFIFCYEALSLCLV
IESLKSAKLTLETLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQICNTYSIKALLN
>Mature_238_residues
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGVLGLLCARDNPLASVHLVEKDGKMAFCSQKNALK
FPNAQVFESDFLDFNPPILYDAIVCNPPFYALGSIKSKIKGHARHQSELDFASLAAKVKKCLKPKGYFIFCYEALSLCLV
IESLKSAKLTLETLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQICNTYSIKALLN

Specific function: Specifically methylates the adenine in position 37 of tRNA(Val) [H]

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. tRNA (adenine-N(6)-)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR020596
- InterPro:   IPR007848
- InterPro:   IPR022882 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: =2.1.1.55 [H]

Molecular weight: Translated: 26565; Mature: 26565

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGVLGLLCARDNPLAS
CCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHCCCCCEEEECCCCCHHHHEECCCCCCEE
VHLVEKDGKMAFCSQKNALKFPNAQVFESDFLDFNPPILYDAIVCNPPFYALGSIKSKIK
EEEEECCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
GHARHQSELDFASLAAKVKKCLKPKGYFIFCYEALSLCLVIESLKSAKLTLETLRFVQSF
HHHHCHHCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQICNTYSIKALLN
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHEEEECC
>Mature Secondary Structure
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGVLGLLCARDNPLAS
CCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHCCCCCEEEECCCCCHHHHEECCCCCCEE
VHLVEKDGKMAFCSQKNALKFPNAQVFESDFLDFNPPILYDAIVCNPPFYALGSIKSKIK
EEEEECCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
GHARHQSELDFASLAAKVKKCLKPKGYFIFCYEALSLCLVIESLKSAKLTLETLRFVQSF
HHHHCHHCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQICNTYSIKALLN
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA