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The map label for this gene is rbn [C]

Identifier: 188528174

GI number: 188528174

Start: 1397003

End: 1397881

Strand: Direct

Name: rbn [C]

Synonym: HPSH_07175

Alternate gene names: 188528174

Gene position: 1397003-1397881 (Clockwise)

Preceding gene: 188528173

Following gene: 188528180

Centisome position: 86.85

GC content: 36.97

Gene sequence:

>879_bases
ATGAGAGATTTTTTTAAAAGCGTTAGAGGGTTTTTGCACCTTCTTAGAATGATTTTCCCCAAGCACTTTCAAAACGCCTT
TTTGGGCTTGAGCGAATTGTTTTACTACGCTTCTAGCTTGAGTTTTTATACGATTTTGTCTCTATCGCCTATTTTGTTGT
TTGTGTTTAGTCTTTTTGTGTCCAATTACATGCAAGCGCACAGCGGTGAAATGGAAGCCTTGATTTTCCCCAACGCTCCT
AAACTCATTGGCGCGATTAAGGATTTTTTAGAAAACTTTAAAAAAACAGACATGACTTTAGGCACGTTTGAAGAGGTGTC
TATTTTAGTGGCGTTGGTGCTTTTTTGTGAAAACTACCGCTCCATCGCGTCAAAGATTTTTCAAGCAAAGCCCAGAGATT
ATGCGCATTTTAAGGGTAAAGAAATCTTTTTATTTTGGGGTTTTGGCACGACTTTAGTGTTTTTATTCGCTCTGCCTTTG
GTGGTGTTTTTTGACATTAAGATTCAAGTGTTTTTTGAAGATAAAAATTCAAGTTTGTTGCATGTTTTAAGATGGATAGG
CACTTACGCGTTTTTTTTGATCCTTTTTACTATTCCTACGAACAAGGTGTTTAAACATTATTTTTGGGTGTTTTTATGGG
TGTTTTTTACGAGCGTTTCTTGGCATGTGCTGAAATGGGCTTTCACTTATTATGTGCTGTATAACCGCACTTACCATGAG
CTTTATGGGAGCGTTTCTATTTTGTGGTTTTTGATGAGCTGGGTGTATGTGAGCTGGCTTGTGATTTTAATTGGCATGTA
TGGGTGCAAGGTGTGCGACACATTCGATCCTAAAGAAGTGTTTAAGAAATTTTTAGGCTTTTTTAAAAAAGAAACTTGA

Upstream 100 bases:

>100_bases
TGGTGTTAGGGGATTATTTAACCACCAAAGGCAAAGCCCCTAAAAAAGATATAGAAAAACTGCTCTCTTATGGCTTGACA
ATGGCGACAAGCTGTCATTG

Downstream 100 bases:

>100_bases
TGAAAAAAGTTTTCTTTTAGATCGGTTCTAAAAATCCAAAAACACAAAAACTATTCAAACACAACCCCCATACCAACCCC
CAACCCCCCAACTAAAAAGT

Product: putative ribonuclease N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRDFFKSVRGFLHLLRMIFPKHFQNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFVSNYMQAHSGEMEALIFPNAP
KLIGAIKDFLENFKKTDMTLGTFEEVSILVALVLFCENYRSIASKIFQAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPL
VVFFDIKIQVFFEDKNSSLLHVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTFDPKEVFKKFLGFFKKET

Sequences:

>Translated_292_residues
MRDFFKSVRGFLHLLRMIFPKHFQNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFVSNYMQAHSGEMEALIFPNAP
KLIGAIKDFLENFKKTDMTLGTFEEVSILVALVLFCENYRSIASKIFQAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPL
VVFFDIKIQVFFEDKNSSLLHVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTFDPKEVFKKFLGFFKKET
>Mature_292_residues
MRDFFKSVRGFLHLLRMIFPKHFQNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFVSNYMQAHSGEMEALIFPNAP
KLIGAIKDFLENFKKTDMTLGTFEEVSILVALVLFCENYRSIASKIFQAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPL
VVFFDIKIQVFFEDKNSSLLHVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTFDPKEVFKKFLGFFKKET

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34632; Mature: 34632

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDFFKSVRGFLHLLRMIFPKHFQNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNYMQAHSGEMEALIFPNAPKLIGAIKDFLENFKKTDMTLGTFEEVSILVALVLFCENYR
HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SIASKIFQAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPLVVFFDIKIQVFFEDKNSSLL
HHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHH
HVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTFDPKEVFKKFLGFFKKET
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDFFKSVRGFLHLLRMIFPKHFQNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNYMQAHSGEMEALIFPNAPKLIGAIKDFLENFKKTDMTLGTFEEVSILVALVLFCENYR
HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SIASKIFQAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPLVVFFDIKIQVFFEDKNSSLL
HHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHH
HVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTFDPKEVFKKFLGFFKKET
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA