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The map label for this gene is yhdJ [C]

Identifier: 188528172

GI number: 188528172

Start: 1391687

End: 1393405

Strand: Reverse

Name: yhdJ [C]

Synonym: HPSH_07155

Alternate gene names: 188528172

Gene position: 1393405-1391687 (Counterclockwise)

Preceding gene: 188528175

Following gene: 188528171

Centisome position: 86.63

GC content: 32.52

Gene sequence:

>1719_bases
ATGTTAAAAAACCCAATAAAAACCCTACTAGACGCTTTAATCAATCGTTTCACTAAAGAACGCTTAGAAACTTTAATCCA
ACAGAATGATGAAGAACTTTTAACTTTCATGCTTGAAAACCAAAACGCTAACGACTACAAAAACGCCTTTTTCAAAACGA
TCGCTAATTCGCTTGTATTCAATCAAGAAGCGTTATTGGAATGTTTAACCAAAGAATTAGAAAATTCTTTCACACGATTT
GAAAATAAAATAGGCTTATATCTACAAGGAAATCATAAGCGTCCTATAAAATCCAGCGAATTAGTCGTTTTGAATTTCCC
TTTTAAAGACAATGTTTTATTGGGCAACGCTAAAGATAACAGTACCAAATCTAAAGAGCTTTTTTACCATGAGATATTGC
ATAAAAAAGAAATTGACACGCTTTTACACAAAAAAGCACTGTGCCGTTTTGAAATGCATGGAGAAAGCGATTTAGAAAGA
GCTTTAAAAGACAAGAACACGAATTATCTCATCAAAGGTAATAATTTGATCGCTCTTCATTCTTTAAAAAAGAAATTCGC
TAAACAAGTTAAATGCATCTACATTGACCCTCCTTATAATACCGGTAATGACAGCTTTAATTACAACGATAATTTCAACC
ACAGCTCATGGCTAGTGTTTATGAAAAACAGGCTTGAAGTGGCTAGGGAATTTTTAAGCGATGATGGGAGTATTTATATT
AATTTAGATTATAATGAAGTGCATTATTGTAAGGTATTAATGGACGAAATTTTTAAACGAGAAAATCTCAGAAGTGAAAT
TATATGGAGAATGGGGTTTTTATCGGGCTACAAAACGGCTGCAAAAAAATATATAAGAAACCACGATACAATTTTATTTT
ATTCTAAAAGTGATAATTATCTTTTTAATAAGACTTATATAGAAAATAAAGATTTTTTACAGCTATTAACAAAAAATGAA
GTGCAAAATGCTTTTAAAAAATTTTCTTTTCCACAAGAAAAAGTAGATGATTTTTTAACTTTTATAAATCATGAAAATAG
AGGTGAAAAATATCCATTAGAAGATACATGGAATAGTAATAAGTGGGATAAATTAAATTCAATTGCTATTGATAGTTCAG
TTTCAAGAGTTGATGAAACTATAGCAATTGATGATGAAAATTTTAAAGGTCAAAAACCCGAAGCCCTAATTTCAAGAATT
TTAGAGGTTTCCACCAACGAAAACGATCTCGTGTTAGACTTTTTTGCTGGGAGTGGGACGACTTGCGCGGTGGCGCACAA
AATGAAACGCCGCTACATTGGCATCGAGCAAATGGACTATATAGAAACGATCACTAAAGAAAGGTTAAAAAAAGTCATAG
GGGGCGAGCAAGGGGGCATTTCTAAAAAATGCGATTTTAAAGGGGGAGGGAGTTTTGTCTATGCTGAATTGAAAGAAGTG
AATTTAGAAGTTAAAAAACAAATCCTTAACGCTAAAAGCGCAAACGAATGCCTAAAAATCTTTAACGATCTTAGCGAGCG
CTTTTTAAAACGCGCCGATTGTAAGATTGGTGAAATCCATAGCGAAGAGTTCCAAAATTTAGATTTAAACGAGCAAAAAA
GGATTTGTTGCGCGCTTTTAGACTCTAACGAAGACTATTTAAACTTGGGCGATATTGACGAAGACGCATGGGGGATAGAT
GGGATCACTAAAAAATACAATGAAATTTTTTATTCTTAA

Upstream 100 bases:

>100_bases
AAAAATTAGATTTAAAGGGCTTGCCGTTTTTCACGCTCCATAATCGCATAGTAAATAGCGAATTTACAACCGCTTTCAAT
CAAATCTTTAAGGATCAAAA

Downstream 100 bases:

>100_bases
GTTTAATCATTCAATGCGCGCTGCTTAACGCATCAAAACGCTAGGCGCTAGGCTATTTAGTGGGTAAAAACAAACGATTA
AAAATATTATTGTAGCATTC

Product: putative type III restriction enzyme M protein

Products: NA

Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MLKNPIKTLLDALINRFTKERLETLIQQNDEELLTFMLENQNANDYKNAFFKTIANSLVFNQEALLECLTKELENSFTRF
ENKIGLYLQGNHKRPIKSSELVVLNFPFKDNVLLGNAKDNSTKSKELFYHEILHKKEIDTLLHKKALCRFEMHGESDLER
ALKDKNTNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYI
NLDYNEVHYCKVLMDEIFKRENLRSEIIWRMGFLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNE
VQNAFKKFSFPQEKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENFKGQKPEALISRI
LEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVIGGEQGGISKKCDFKGGGSFVYAELKEV
NLEVKKQILNAKSANECLKIFNDLSERFLKRADCKIGEIHSEEFQNLDLNEQKRICCALLDSNEDYLNLGDIDEDAWGID
GITKKYNEIFYS

Sequences:

>Translated_572_residues
MLKNPIKTLLDALINRFTKERLETLIQQNDEELLTFMLENQNANDYKNAFFKTIANSLVFNQEALLECLTKELENSFTRF
ENKIGLYLQGNHKRPIKSSELVVLNFPFKDNVLLGNAKDNSTKSKELFYHEILHKKEIDTLLHKKALCRFEMHGESDLER
ALKDKNTNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYI
NLDYNEVHYCKVLMDEIFKRENLRSEIIWRMGFLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNE
VQNAFKKFSFPQEKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENFKGQKPEALISRI
LEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVIGGEQGGISKKCDFKGGGSFVYAELKEV
NLEVKKQILNAKSANECLKIFNDLSERFLKRADCKIGEIHSEEFQNLDLNEQKRICCALLDSNEDYLNLGDIDEDAWGID
GITKKYNEIFYS
>Mature_572_residues
MLKNPIKTLLDALINRFTKERLETLIQQNDEELLTFMLENQNANDYKNAFFKTIANSLVFNQEALLECLTKELENSFTRF
ENKIGLYLQGNHKRPIKSSELVVLNFPFKDNVLLGNAKDNSTKSKELFYHEILHKKEIDTLLHKKALCRFEMHGESDLER
ALKDKNTNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYI
NLDYNEVHYCKVLMDEIFKRENLRSEIIWRMGFLSGYKTAAKKYIRNHDTILFYSKSDNYLFNKTYIENKDFLQLLTKNE
VQNAFKKFSFPQEKVDDFLTFINHENRGEKYPLEDTWNSNKWDKLNSIAIDSSVSRVDETIAIDDENFKGQKPEALISRI
LEVSTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVIGGEQGGISKKCDFKGGGSFVYAELKEV
NLEVKKQILNAKSANECLKIFNDLSERFLKRADCKIGEIHSEEFQNLDLNEQKRICCALLDSNEDYLNLGDIDEDAWGID
GITKKYNEIFYS

Specific function: Unknown

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: =2.1.1.72 [H]

Molecular weight: Translated: 66645; Mature: 66645

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNPIKTLLDALINRFTKERLETLIQQNDEELLTFMLENQNANDYKNAFFKTIANSLVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
NQEALLECLTKELENSFTRFENKIGLYLQGNHKRPIKSSELVVLNFPFKDNVLLGNAKDN
CHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCC
STKSKELFYHEILHKKEIDTLLHKKALCRFEMHGESDLERALKDKNTNYLIKGNNLIALH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCCCEEEECCCEEEHH
SLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYI
HHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEE
NLDYNEVHYCKVLMDEIFKRENLRSEIIWRMGFLSGYKTAAKKYIRNHDTILFYSKSDNY
EECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCE
LFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQEKVDDFLTFINHENRGEKYPLEDTWNSN
EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
KWDKLNSIAIDSSVSRVDETIAIDDENFKGQKPEALISRILEVSTNENDLVLDFFAGSGT
CCCCHHHEEECCHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC
TCAVAHKMKRRYIGIEQMDYIETITKERLKKVIGGEQGGISKKCDFKGGGSFVYAELKEV
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHH
NLEVKKQILNAKSANECLKIFNDLSERFLKRADCKIGEIHSEEFQNLDLNEQKRICCALL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHCEEEEEE
DSNEDYLNLGDIDEDAWGIDGITKKYNEIFYS
CCCCCEEECCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MLKNPIKTLLDALINRFTKERLETLIQQNDEELLTFMLENQNANDYKNAFFKTIANSLVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
NQEALLECLTKELENSFTRFENKIGLYLQGNHKRPIKSSELVVLNFPFKDNVLLGNAKDN
CHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCC
STKSKELFYHEILHKKEIDTLLHKKALCRFEMHGESDLERALKDKNTNYLIKGNNLIALH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCCCEEEECCCEEEHH
SLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYI
HHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEE
NLDYNEVHYCKVLMDEIFKRENLRSEIIWRMGFLSGYKTAAKKYIRNHDTILFYSKSDNY
EECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCE
LFNKTYIENKDFLQLLTKNEVQNAFKKFSFPQEKVDDFLTFINHENRGEKYPLEDTWNSN
EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
KWDKLNSIAIDSSVSRVDETIAIDDENFKGQKPEALISRILEVSTNENDLVLDFFAGSGT
CCCCHHHEEECCHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC
TCAVAHKMKRRYIGIEQMDYIETITKERLKKVIGGEQGGISKKCDFKGGGSFVYAELKEV
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHH
NLEVKKQILNAKSANECLKIFNDLSERFLKRADCKIGEIHSEEFQNLDLNEQKRICCALL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHCEEEEEE
DSNEDYLNLGDIDEDAWGIDGITKKYNEIFYS
CCCCCEEECCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]