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The map label for this gene is psd [H]

Identifier: 188528146

GI number: 188528146

Start: 1363780

End: 1364583

Strand: Reverse

Name: psd [H]

Synonym: HPSH_07025

Alternate gene names: 188528146

Gene position: 1364583-1363780 (Counterclockwise)

Preceding gene: 188528147

Following gene: 188528145

Centisome position: 84.83

GC content: 40.05

Gene sequence:

>804_bases
ATGATAGCTTTAAGCAACGCTCTTTCAAGGGTTTTTGGCTCTGTCGCTGGCTATGAATTCCCTTCTTTTATCCAAAAAGG
CATCAACGCCCTTTATGTTAAGATCTTTAAAATTGATTTGAGCGAGTTTGAGCCTTTAGAAAATTATAAGAGTTTGAACG
CTCTTTTCACGCGCTCTTTAAAAAAAGAACGCCCCTTTGACAAAACCCCTAATGCATGCATTGCGCCTTGCGATGCTTTA
ATCACTGAATGCGCTTTCTTAGACAACGATAGCGCTTTACAAATTAAAGGCATGCCCTATAAAGCGCATGAATTAGTGGG
CGAAATCAACCCCTTAAGCCCTTCTTTTTTCTATGTGAATTTTTACCTTTCGCCCAAAGATTACCACCACTACCACGCCC
CTTGCGATTTAGAAATTTTAGAGGCTCGTTGCTTTGCGGGGAAACTGCTGCCGGTCAATAAGCCTTCATTACACAAAAAC
AAAAATCTGTTTGTGGGCAATGAAAGAGTCGCGCTGGTTGCAAAAGACATTCAAGGCAATAGGCTGTATTTTGTAGCGGT
GGGAGCGTTAAATGTGGGTAAAATGCGTTTTAATTTTGATAAGAATATCCAAACTAACGCTAAAGCCCATTTGACGCAAG
CCTACTCTTACAACCCTCCAATTAAGGTTAAAAAAGGGGATAATTTAGGGAATTTTGAAATGGGCTCTACGATCGTTTTA
TTCGTTCAAAACACCGCTTTTAAAGATTTGAAAGAAAAAAGCGTGAAGTTTGGGGAAAGTATAGGGGAATTTCATGCCAA
CTGA

Upstream 100 bases:

>100_bases
TGAAAATGTATCAAGAAGGCTATAGCGTGGATTCTATTTCTAAAGAATTTAAAGTGAGTAAGGGCGAGGTGGAGTTTGTA
TTGAACATGGCAGGGTTAAA

Downstream 100 bases:

>100_bases
TAACGATTTAAAAACTTCTATTGTGGAATTATTGCGCGATTTAGACGCGCTTTTAGTGGCTCATTTTTATCAAAAAGATG
AGATTGTGGAGTTGGCCCAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MIALSNALSRVFGSVAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKTPNACIAPCDAL
ITECAFLDNDSALQIKGMPYKAHELVGEINPLSPSFFYVNFYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLHKN
KNLFVGNERVALVAKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKAHLTQAYSYNPPIKVKKGDNLGNFEMGSTIVL
FVQNTAFKDLKEKSVKFGESIGEFHAN

Sequences:

>Translated_267_residues
MIALSNALSRVFGSVAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKTPNACIAPCDAL
ITECAFLDNDSALQIKGMPYKAHELVGEINPLSPSFFYVNFYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLHKN
KNLFVGNERVALVAKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKAHLTQAYSYNPPIKVKKGDNLGNFEMGSTIVL
FVQNTAFKDLKEKSVKFGESIGEFHAN
>Mature_267_residues
MIALSNALSRVFGSVAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKTPNACIAPCDAL
ITECAFLDNDSALQIKGMPYKAHELVGEINPLSPSFFYVNFYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLHKN
KNLFVGNERVALVAKDIQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKAHLTQAYSYNPPIKVKKGDNLGNFEMGSTIVL
FVQNTAFKDLKEKSVKFGESIGEFHAN

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=296, Percent_Identity=29.3918918918919, Blast_Score=132, Evalue=4e-31,
Organism=Escherichia coli, GI1790604, Length=244, Percent_Identity=29.9180327868852, Blast_Score=106, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71980843, Length=269, Percent_Identity=27.5092936802974, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71980840, Length=269, Percent_Identity=27.5092936802974, Blast_Score=93, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6324160, Length=168, Percent_Identity=38.0952380952381, Blast_Score=89, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6321609, Length=250, Percent_Identity=26, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649526, Length=295, Percent_Identity=27.1186440677966, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24649528, Length=295, Percent_Identity=27.1186440677966, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24649524, Length=295, Percent_Identity=27.1186440677966, Blast_Score=104, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 29974; Mature: 29974

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALSNALSRVFGSVAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEEEEEHHHCCCHHHHHHHHHHHHHHH
KKERPFDKTPNACIAPCDALITECAFLDNDSALQIKGMPYKAHELVGEINPLSPSFFYVN
HHCCCCCCCCCCHHCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
FYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLHKNKNLFVGNERVALVAKDIQGN
EEECCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCEEECCCEEEEEEEECCCC
RLYFVAVGALNVGKMRFNFDKNIQTNAKAHLTQAYSYNPPIKVKKGDNLGNFEMGSTIVL
EEEEEEEECEEECEEEEECCCCCCCCCHHEEEEEECCCCCEEEECCCCCCCEECCCEEEE
FVQNTAFKDLKEKSVKFGESIGEFHAN
EEECCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIALSNALSRVFGSVAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEEEEEHHHCCCHHHHHHHHHHHHHHH
KKERPFDKTPNACIAPCDALITECAFLDNDSALQIKGMPYKAHELVGEINPLSPSFFYVN
HHCCCCCCCCCCHHCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
FYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLHKNKNLFVGNERVALVAKDIQGN
EEECCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCEEECCCEEEEEEEECCCC
RLYFVAVGALNVGKMRFNFDKNIQTNAKAHLTQAYSYNPPIKVKKGDNLGNFEMGSTIVL
EEEEEEEECEEECEEEEECCCCCCCCCHHEEEEEECCCCCEEEECCCCCCCEECCCEEEE
FVQNTAFKDLKEKSVKFGESIGEFHAN
EEECCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA