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The map label for this gene is exbD [H]

Identifier: 188528129

GI number: 188528129

Start: 1346099

End: 1346488

Strand: Direct

Name: exbD [H]

Synonym: HPSH_06930

Alternate gene names: 188528129

Gene position: 1346099-1346488 (Clockwise)

Preceding gene: 188528128

Following gene: 188528130

Centisome position: 83.68

GC content: 37.44

Gene sequence:

>390_bases
ATGAAAAGCATCAGAAGAGGCGATGGGCTGAATGTTGTCCCTTTTATTGATATTATGCTCGTTTTGCTAGCGATTGTATT
AAGCGTTTCTACTTTTATCGCGCAAGGTAAGATTAAAGTCAGTCTCCCTAACGCTAAAAATGCGGAAAAATCCCAGCCAA
ACGATCAAAAAGTGGTGGTCATCTCTGTAGATGAGCATGACAATATTTTCGTAGATGACAAACCGATGAATTTAGAAGCT
TTGAGCGCTGTAGTCAAACAAACAGACCCTAAAACCCTTATAGACTTAAAAAGCGACAAAGGCTCTCGTTTTGAAACTTT
TATCAGCATTATGGATATTTTAAAAGAGCATAATCATGAAAATTTCTCCATCTCCACAGAAGCTAAGTAA

Upstream 100 bases:

>100_bases
CCGCTTTAGGGCTTGCTGTGGCGATCCCTACGCTGATTGCATATAATGGCTTATTGAGAAAATCCGATGTTTTGAGCGAA
AAATTTAGGATCATGAAAAA

Downstream 100 bases:

>100_bases
AGTCTCAACGAGTGTTAGCTTTTTAATCTCTTTTGCCCTATACGCTATAGGGTTTGGCTATTTTTTACTGCGCGAAGAGG
CCCCAGCGCCTTTAGCGCAA

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPMNLEA
LSAVVKQTDPKTLIDLKSDKGSRFETFISIMDILKEHNHENFSISTEAK

Sequences:

>Translated_129_residues
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPMNLEA
LSAVVKQTDPKTLIDLKSDKGSRFETFISIMDILKEHNHENFSISTEAK
>Mature_129_residues
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPMNLEA
LSAVVKQTDPKTLIDLKSDKGSRFETFISIMDILKEHNHENFSISTEAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=113, Percent_Identity=34.5132743362832, Blast_Score=59, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014171 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14334; Mature: 14334

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEE
ISVDEHDNIFVDDKPMNLEALSAVVKQTDPKTLIDLKSDKGSRFETFISIMDILKEHNHE
EEECCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
NFSISTEAK
CEEEECCCC
>Mature Secondary Structure
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEE
ISVDEHDNIFVDDKPMNLEALSAVVKQTDPKTLIDLKSDKGSRFETFISIMDILKEHNHE
EEECCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
NFSISTEAK
CEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]