Click here to switch to the map view.

The map label for this gene is 188528018

Identifier: 188528018

GI number: 188528018

Start: 1255166

End: 1255822

Strand: Direct

Name: 188528018

Synonym: HPSH_06365

Alternate gene names: NA

Gene position: 1255166-1255822 (Clockwise)

Preceding gene: 188528017

Following gene: 188528019

Centisome position: 78.03

GC content: 35.62

Gene sequence:

>657_bases
GTGAAAAATTTCAACCGCCTTATTTATACGGACAATCTTGAAGAGAGCCTAGAAGAGGTTGCAAGCCTTTTCAAACACCA
CATTAAATTCTACACCGAGATCATTGAAAAAGACAAAAAGGTGATCAAAACTTTTAACAAGGATTTTAAAATGGAGCATG
CTAAAGAAGTTATTTCAAAGGCTCACTTAAAACACAGCGAACCAAACGCCTTTTTAATCGCTGCGCCCAGTTATGGCATA
GAAGCCCAAAACGCGCTTTTAAAAATCTTAGAAGAACCCCCGAATAATGTTTGTTTTATCATGTTTGCTAAAAGTCCAAA
CCATGTTTTAGCCACCATTAAATCCCGCTTGATCAAAGAAGACAAGCGCCAAAAAATCCCCCTAAAACCTTTAGATTTGG
ATTTATCAAGGCTGGATTTGAAAGATATTTATGCGTTTTTAAAAAATTTAGACAAAGAAAATTTTGATTCCAGAGAAAAT
CAGAGGGAAAAAATTGAAAGCCTGTTGGAGAGCGTTAATAGGCATAAGATCCCATTAAACGAACAAGAATTGCAAGCCTT
TGATTTAGCGATCAAAGCTAACAGCTCTTATTACAAGCTCAGCTATAATCTTTTACCCCTACTTTTAAGCCTTTTATCTA
AAAAGAAAACGCCATGA

Upstream 100 bases:

>100_bases
TTTTAAAAGAGCATGACATCTTATTGGATTATAAATTATTGCAACTCTTCAAACTCTTTGAAAACGCGCTTTTTAGCGCG
CTATACAATAAGATCACTCT

Downstream 100 bases:

>100_bases
TTTTAAAACGCCTTAACCCTGATGCGCTCAAAAACGCCCTTTTAAAAACCGGATCAGAAAAACCCGCTCAAACCCATATG
CATAAAAAAGGCGTTAGCTT

Product: DNA polymerase III subunit delta'

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Delta Prime Subunit HolB; DNA Polymerase III Delta Prime Subunit; DNA Polymerase III Delta Prime Subunit Holb

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKNFNRLIYTDNLEESLEEVASLFKHHIKFYTEIIEKDKKVIKTFNKDFKMEHAKEVISKAHLKHSEPNAFLIAAPSYGI
EAQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKEDKRQKIPLKPLDLDLSRLDLKDIYAFLKNLDKENFDSREN
QREKIESLLESVNRHKIPLNEQELQAFDLAIKANSSYYKLSYNLLPLLLSLLSKKKTP

Sequences:

>Translated_218_residues
MKNFNRLIYTDNLEESLEEVASLFKHHIKFYTEIIEKDKKVIKTFNKDFKMEHAKEVISKAHLKHSEPNAFLIAAPSYGI
EAQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKEDKRQKIPLKPLDLDLSRLDLKDIYAFLKNLDKENFDSREN
QREKIESLLESVNRHKIPLNEQELQAFDLAIKANSSYYKLSYNLLPLLLSLLSKKKTP
>Mature_218_residues
MKNFNRLIYTDNLEESLEEVASLFKHHIKFYTEIIEKDKKVIKTFNKDFKMEHAKEVISKAHLKHSEPNAFLIAAPSYGI
EAQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKEDKRQKIPLKPLDLDLSRLDLKDIYAFLKNLDKENFDSREN
QREKIESLLESVNRHKIPLNEQELQAFDLAIKANSSYYKLSYNLLPLLLSLLSKKKTP

Specific function: Unknown

COG id: COG0470

COG function: function code L; ATPase involved in DNA replication

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 25423; Mature: 25423

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFNRLIYTDNLEESLEEVASLFKHHIKFYTEIIEKDKKVIKTFNKDFKMEHAKEVISK
CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHLKHSEPNAFLIAAPSYGIEAQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKE
HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHH
DKRQKIPLKPLDLDLSRLDLKDIYAFLKNLDKENFDSRENQREKIESLLESVNRHKIPLN
HHHCCCCCCCCCCCHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
EQELQAFDLAIKANSSYYKLSYNLLPLLLSLLSKKKTP
HHHHHHHHHEEECCCCEEEEHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNFNRLIYTDNLEESLEEVASLFKHHIKFYTEIIEKDKKVIKTFNKDFKMEHAKEVISK
CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHLKHSEPNAFLIAAPSYGIEAQNALLKILEEPPNNVCFIMFAKSPNHVLATIKSRLIKE
HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHH
DKRQKIPLKPLDLDLSRLDLKDIYAFLKNLDKENFDSRENQREKIESLLESVNRHKIPLN
HHHCCCCCCCCCCCHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
EQELQAFDLAIKANSSYYKLSYNLLPLLLSLLSKKKTP
HHHHHHHHHEEECCCCEEEEHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA