Click here to switch to the map view.

The map label for this gene is 188528014

Identifier: 188528014

GI number: 188528014

Start: 1252497

End: 1252787

Strand: Direct

Name: 188528014

Synonym: HPSH_06345

Alternate gene names: NA

Gene position: 1252497-1252787 (Clockwise)

Preceding gene: 188528012

Following gene: 188528015

Centisome position: 77.87

GC content: 39.18

Gene sequence:

>291_bases
ATGAAAAAGGTTATTATGGCTTTAGGCGTTTTAGCGTTCGCAAACTCTTTAATGGCAACAGATGTTAAGGCTCTTGCAAA
AGGTTGTGCCGCTTGCCATGGGGTTAAGTTTGAAAAGAAAGCTTTAGGCAAAAGCAAAATCGTCAACATGATGAGTGAAG
CGGAAATTGAAAAAGAGCTTATGGATTTTAAAAACGGTGCCAATAAGAATCCTGTCATGGCCGCGCAAGCTAAAAAATTA
AGCGATGAAGACATCAAAGCTTTAGCCAAATACATCCCCACTCTCAAATAA

Upstream 100 bases:

>100_bases
ATCATATTTATTTCTCTTATTTTCATTTCATTTTAAGCGAAACTTAAACTTGTAATTGTATCATTTTAAGATTATTTTGA
TAAGCATGAGGAGACACACT

Downstream 100 bases:

>100_bases
ACCCTCTTATTTTTAATAGCGCTGTTTGGGTGCTATTAAAATGAGTTTCAAGCCTTTTTTTTAATTTTTGATTTTAATGG
CATTCTTAACCCTACTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Cytochrome c553 [H]

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MKKVIMALGVLAFANSLMATDVKALAKGCAACHGVKFEKKALGKSKIVNMMSEAEIEKELMDFKNGANKNPVMAAQAKKL
SDEDIKALAKYIPTLK

Sequences:

>Translated_96_residues
MKKVIMALGVLAFANSLMATDVKALAKGCAACHGVKFEKKALGKSKIVNMMSEAEIEKELMDFKNGANKNPVMAAQAKKL
SDEDIKALAKYIPTLK
>Mature_96_residues
MKKVIMALGVLAFANSLMATDVKALAKGCAACHGVKFEKKALGKSKIVNMMSEAEIEKELMDFKNGANKNPVMAAQAKKL
SDEDIKALAKYIPTLK

Specific function: Natural electron acceptor for a formate dehydrogenase [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 10344; Mature: 10344

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
9.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVIMALGVLAFANSLMATDVKALAKGCAACHGVKFEKKALGKSKIVNMMSEAEIEKEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDFKNGANKNPVMAAQAKKLSDEDIKALAKYIPTLK
HHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKVIMALGVLAFANSLMATDVKALAKGCAACHGVKFEKKALGKSKIVNMMSEAEIEKEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDFKNGANKNPVMAAQAKKLSDEDIKALAKYIPTLK
HHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]