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The map label for this gene is yohD [H]

Identifier: 188527946

GI number: 188527946

Start: 1179681

End: 1180262

Strand: Reverse

Name: yohD [H]

Synonym: HPSH_05995

Alternate gene names: 188527946

Gene position: 1180262-1179681 (Counterclockwise)

Preceding gene: 188527950

Following gene: 188527945

Centisome position: 73.37

GC content: 39.35

Gene sequence:

>582_bases
ATGCAAGAAGCGTTGTTGCGTTTTCAAGAGGGTTTTAAGGAGTGGGGTTATCTCATCTTATTTTTGTATTGTTTGGGGGG
CGGGTTTGTGGGGATTGTTATCGCCTCTATTTTGAGCGCTACCACGCACGCTTTGGACATAAAAATAACCATTCTTGTCG
CTTTTTTAGGGAATATGGTAGGGAGTGGGGCTCTTGTGGTCTTTGCCCGCTATCAAAAAAGAGAGTTTTTAAAGTATTTT
CATAAGCATAGAAGAAAGCTTGCTTTAGCGAGTTTGTGGGTGAAACGCTACGCCTTGCTCATGATTTTTGTCAATAAATA
TTTGTATGGGATTAAAAGCGTTGTGCCTTTGGCGGTTGGTTTTAGCAAATACCCTTTAAAAAAATTTTTATGGCTTAATG
TTTTATCCAGTTTTTTGTGGGCGGCTCTCGTAGGGAGCGTTTCTTTTCAAGCGAGCGATTGGGTGAAAACGCTGTATGAA
AGGCTTTCTCATTACACTTCGTTTTTTCTTATTGGTTTGGGTCTTGTGTTGCTTTTAATATGGTTTTTATTGAAACGATA
TTCGCGCAAAATGGGTTTTTAA

Upstream 100 bases:

>100_bases
GGATAACGCTGTCATTATACTAAAAGATAGCGTTTAAATCACCAATAGGTTGAATAAGTTTGGATAACATGAAAATGAGA
AAATTAAAAAGAGAGTTTTT

Downstream 100 bases:

>100_bases
GCAAGATGTTTAATTAAATGCGCTAAACTACGCCCACAAGCATTCGTATAAGCGGATGCGTTAATATCTTAAAATAAGGA
TTGAGAATATGGGAAAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MQEALLRFQEGFKEWGYLILFLYCLGGGFVGIVIASILSATTHALDIKITILVAFLGNMVGSGALVVFARYQKREFLKYF
HKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVGFSKYPLKKFLWLNVLSSFLWAALVGSVSFQASDWVKTLYE
RLSHYTSFFLIGLGLVLLLIWFLLKRYSRKMGF

Sequences:

>Translated_193_residues
MQEALLRFQEGFKEWGYLILFLYCLGGGFVGIVIASILSATTHALDIKITILVAFLGNMVGSGALVVFARYQKREFLKYF
HKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVGFSKYPLKKFLWLNVLSSFLWAALVGSVSFQASDWVKTLYE
RLSHYTSFFLIGLGLVLLLIWFLLKRYSRKMGF
>Mature_193_residues
MQEALLRFQEGFKEWGYLILFLYCLGGGFVGIVIASILSATTHALDIKITILVAFLGNMVGSGALVVFARYQKREFLKYF
HKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVGFSKYPLKKFLWLNVLSSFLWAALVGSVSFQASDWVKTLYE
RLSHYTSFFLIGLGLVLLLIWFLLKRYSRKMGF

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=155, Percent_Identity=26.4516129032258, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22229; Mature: 22229

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEALLRFQEGFKEWGYLILFLYCLGGGFVGIVIASILSATTHALDIKITILVAFLGNMV
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSGALVVFARYQKREFLKYFHKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FSKYPLKKFLWLNVLSSFLWAALVGSVSFQASDWVKTLYERLSHYTSFFLIGLGLVLLLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFLLKRYSRKMGF
HHHHHHHHHHCCC
>Mature Secondary Structure
MQEALLRFQEGFKEWGYLILFLYCLGGGFVGIVIASILSATTHALDIKITILVAFLGNMV
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSGALVVFARYQKREFLKYFHKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FSKYPLKKFLWLNVLSSFLWAALVGSVSFQASDWVKTLYERLSHYTSFFLIGLGLVLLLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFLLKRYSRKMGF
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]