| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is hcpE [H]
Identifier: 188527898
GI number: 188527898
Start: 1134057
End: 1134827
Strand: Reverse
Name: hcpE [H]
Synonym: HPSH_05745
Alternate gene names: 188527898
Gene position: 1134827-1134057 (Counterclockwise)
Preceding gene: 188527899
Following gene: 188527897
Centisome position: 70.55
GC content: 37.87
Gene sequence:
>771_bases ATGGGATACGCAAGCAAATTAGCCTTGAAGATTTGTTTGGCGAGTTTATGTTTATTTAGTGCTCTTGGTGCAGAACACCT TGAACAAAAAGGGAATTATATTTATAAGGGGGAGGAAGCCTATAATAATAGGGAATACGAGCGAGCGGCTTCTTTTTATA AGAGCGCTATTAAAAATGGCGAGCCGCTTGCTTATGTTCTTTTAGGAATCATGTATGAAAATGGTAGGGGTGTGCCTAAA GATTACAAGAAAGCGGTTGAATATTTTCAAAAAGCGGTTGATAACGACATACCTAGAGGGTATAATAATTTAGGCGTGAT GTATAAAGAGGGTAGGGGCGTTACTAAAGATGAAAAGAAAGCCGTGGAATATTTTAGAATAGCTACAGAGAAAGGCTATA CTAACGCCTATATAAACTTAGGCATCATGTATATGGAGGGTAGGGGCGTTCCAAGCAACTATGCGAAAGCGACAGAGTGC TTTAGAAAAGCGATGCATAAGGGTAATGTAGAAGCTTATATCCTTTTAGGGGATATTTATTATAGTGGGAATGATCAATT GGGTATTGAACCAGACAAAGATAAGGCTATTGTCTATTATAAAATGGCGGCTGATATGAGTTCTTCTAGGGCTTATGAAG GGTTATCAGAGTCTTATCGGTATGGGTTAGGTGTGGAAAAAGATAAGCAAAAGGCTGAAGAATACATGCAAAAAGCATGC GATTTTGACATTGATAAAAATTGTAAGAAAAAGAATACTTCAAGCCGATGA
Upstream 100 bases:
>100_bases GTTTGAGAATGTTTGCTGGTTTTGGAACGCATGCAGTTTCTTTTTTAAGATTGGTAGCCATTGGCATTATGTTTGATCTT GTTAAAGCAGAGGAGTAACA
Downstream 100 bases:
>100_bases CTCTCAAACTTGGGCTTGATTCAAGGATTTTTTGTTTTATGTTAAGTAGCGTGTTTTTTGAACAATTGATTTGAAGCGGT TAGATTAAAGGTATTGCGTT
Product: cysteine-rich protein X
Products: NA
Alternate protein names: Cysteine-rich protein E [H]
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MGYASKLALKICLASLCLFSALGAEHLEQKGNYIYKGEEAYNNREYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPK DYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGRGVTKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATEC FRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLSESYRYGLGVEKDKQKAEEYMQKAC DFDIDKNCKKKNTSSR
Sequences:
>Translated_256_residues MGYASKLALKICLASLCLFSALGAEHLEQKGNYIYKGEEAYNNREYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPK DYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGRGVTKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATEC FRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLSESYRYGLGVEKDKQKAEEYMQKAC DFDIDKNCKKKNTSSR >Mature_255_residues GYASKLALKICLASLCLFSALGAEHLEQKGNYIYKGEEAYNNREYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKD YKKAVEYFQKAVDNDIPRGYNNLGVMYKEGRGVTKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECF RKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLSESYRYGLGVEKDKQKAEEYMQKACD FDIDKNCKKKNTSSR
Specific function: May hydrolyze 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 8 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI151301150, Length=193, Percent_Identity=34.7150259067358, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI19923669, Length=142, Percent_Identity=34.5070422535211, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI154689719, Length=163, Percent_Identity=31.2883435582822, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI87081769, Length=204, Percent_Identity=32.843137254902, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1786867, Length=109, Percent_Identity=32.1100917431193, Blast_Score=64, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17563256, Length=209, Percent_Identity=28.2296650717703, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI21355295, Length=229, Percent_Identity=30.1310043668122, Blast_Score=89, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006597 - InterPro: IPR011990 [H]
Pfam domain/function: PF08238 Sel1 [H]
EC number: =3.5.2.6 [H]
Molecular weight: Translated: 29023; Mature: 28892
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYASKLALKICLASLCLFSALGAEHLEQKGNYIYKGEEAYNNREYERAASFYKSAIKNG CCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEECHHHHCCHHHHHHHHHHHHHHCCC EPLAYVLLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGRGVTKDEKK CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHH AVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNVEAYILLGDIY HHHHHHHHHCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEE YSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLSESYRYGLGVEKDKQKAEEYMQKAC ECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC DFDIDKNCKKKNTSSR CCCCCCCCCCCCCCCC >Mature Secondary Structure GYASKLALKICLASLCLFSALGAEHLEQKGNYIYKGEEAYNNREYERAASFYKSAIKNG CHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEECHHHHCCHHHHHHHHHHHHHHCCC EPLAYVLLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGRGVTKDEKK CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHH AVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNVEAYILLGDIY HHHHHHHHHCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEE YSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLSESYRYGLGVEKDKQKAEEYMQKAC ECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC DFDIDKNCKKKNTSSR CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]