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The map label for this gene is csd [H]

Identifier: 188527830

GI number: 188527830

Start: 1060363

End: 1061685

Strand: Reverse

Name: csd [H]

Synonym: HPSH_05380

Alternate gene names: 188527830

Gene position: 1061685-1060363 (Counterclockwise)

Preceding gene: 188527831

Following gene: 188527829

Centisome position: 66.0

GC content: 41.04

Gene sequence:

>1323_bases
ATGCAAGCGTTTTTAAATAGGAGTTTTGCTCCCTTGCTCAATCCTAATGAGAGTCCTTTAGAGCAGGTTAGATCCAGTAT
TATTTTAAAAAAAGGGGTGTCTTATTTTGACTGGGGGGCTTCAGGTTTAGCGAGCGCTTTAGTGGAAAAGCGCGTGAAAT
CTTTACTGCCTTATTATGCGAACGCTCATTCTGTGGCTTCTAAACATGCGATTTTAATGGGCATGCTTTTAAAAGAGTGC
CAAGAAAAGTTAAAGCGTTCTTTAAATTTGAGCGATGATCATTGCGTCTTGAGCGCAGGGTATGGGGCGAGCTCAGCGAT
TAAGAAATTTCAAGAAATTTTAGGGGTGTGTATCCCTTCAAAAACGAAGAAAAATTTAGAGCCGTATTTGAAAGATATGG
CTTTAAAGCGTGTGATTGTAGGGCCTTATGAGCATCATTCTAATGAAATTAGCTGGCGTGAAGGCTTGTGTGAAGTGGTG
CGTATTCCTTTAAATGAACATGGCTTATTGGATTTAGAAATTTTAGAGCAAACTTTAAAAAAATCCCCTAACAGCTTGGT
TTCTATGAGTGCGGCTTCTAATGTAACCGGACTGCTTACGCCCTTAAAAGAAGTTTCATCATTGTGTGAGAAATATAAGG
CCGCTTTGGCTTTGGATTTGGCGAATTTTAGCGTGCATGCTAACCCTAAAGATTGCAAATACCAAACCGGTTTTTATGCG
CCTCACAAGCTTTTAGGGGGCATTGGAGGGTGCGGTCTTTTAGGCATTTCTAAAGATTTGATTGACACGCAAATCGCCCC
GAGTTTTAGTGCAGGAGGTGTGATTAAATACGCTAATTGCACACGGCATGAATTTATTGATGAATTGCCTTTGAGGGAAG
AGTTTGGCACGCCAGGATTGTTGCAATTTTACAGGAGCGCTCTAGCGTATCAATTAAGAGATGAATGCGGTTTGGATTTT
ATCCACAAGAAAGAAAACAACCTTTTAAGAGTGCTCATGCATGGCTTAAAAGACTTGCCCGCTATTAATATCTATGGGAA
TTTAACAGCGAGTCGTGTGGGGGTAGTGGCTTTTAATATTGGGGGGATTTCGCCCTATGATTTAGCGAGGGTTTTAAGCT
ATGAATACGCTATTGAAACTCGGGCAGGTTGCTCTTGCGCGGGGCCTTATGGGCATGATTTATTGAATCTTAACGCTCAA
AAGTCAAGCGATTTTAACGCTAAACCCGGATGGATTAGAGTGAGCTTGCACTTCACGCATTCCATAAACGATATTGATTA
TTTGCTAGACAGCTTGAAAAAAGCGGTCAAAAAATTGCGTTAA

Upstream 100 bases:

>100_bases
GCTTTTAACCAATGTGGGTAAAAACGCAGGCCAAGAGGTGATGCATTTGCATTTTCATATTTTGAGCGGGGATAAACATT
AAAAGCGTTGGTGGTGTTTC

Downstream 100 bases:

>100_bases
GCTAAAACTATTTTTAAGGAAAAATTTGGACATTTTAGATTTGAACAAAGCGCAAGCGGTGCAACAAAATGAGCAAGAGG
TAGAGGATAAAGAGCGAGAG

Product: nifS-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MQAFLNRSFAPLLNPNESPLEQVRSSIILKKGVSYFDWGASGLASALVEKRVKSLLPYYANAHSVASKHAILMGMLLKEC
QEKLKRSLNLSDDHCVLSAGYGASSAIKKFQEILGVCIPSKTKKNLEPYLKDMALKRVIVGPYEHHSNEISWREGLCEVV
RIPLNEHGLLDLEILEQTLKKSPNSLVSMSAASNVTGLLTPLKEVSSLCEKYKAALALDLANFSVHANPKDCKYQTGFYA
PHKLLGGIGGCGLLGISKDLIDTQIAPSFSAGGVIKYANCTRHEFIDELPLREEFGTPGLLQFYRSALAYQLRDECGLDF
IHKKENNLLRVLMHGLKDLPAINIYGNLTASRVGVVAFNIGGISPYDLARVLSYEYAIETRAGCSCAGPYGHDLLNLNAQ
KSSDFNAKPGWIRVSLHFTHSINDIDYLLDSLKKAVKKLR

Sequences:

>Translated_440_residues
MQAFLNRSFAPLLNPNESPLEQVRSSIILKKGVSYFDWGASGLASALVEKRVKSLLPYYANAHSVASKHAILMGMLLKEC
QEKLKRSLNLSDDHCVLSAGYGASSAIKKFQEILGVCIPSKTKKNLEPYLKDMALKRVIVGPYEHHSNEISWREGLCEVV
RIPLNEHGLLDLEILEQTLKKSPNSLVSMSAASNVTGLLTPLKEVSSLCEKYKAALALDLANFSVHANPKDCKYQTGFYA
PHKLLGGIGGCGLLGISKDLIDTQIAPSFSAGGVIKYANCTRHEFIDELPLREEFGTPGLLQFYRSALAYQLRDECGLDF
IHKKENNLLRVLMHGLKDLPAINIYGNLTASRVGVVAFNIGGISPYDLARVLSYEYAIETRAGCSCAGPYGHDLLNLNAQ
KSSDFNAKPGWIRVSLHFTHSINDIDYLLDSLKKAVKKLR
>Mature_440_residues
MQAFLNRSFAPLLNPNESPLEQVRSSIILKKGVSYFDWGASGLASALVEKRVKSLLPYYANAHSVASKHAILMGMLLKEC
QEKLKRSLNLSDDHCVLSAGYGASSAIKKFQEILGVCIPSKTKKNLEPYLKDMALKRVIVGPYEHHSNEISWREGLCEVV
RIPLNEHGLLDLEILEQTLKKSPNSLVSMSAASNVTGLLTPLKEVSSLCEKYKAALALDLANFSVHANPKDCKYQTGFYA
PHKLLGGIGGCGLLGISKDLIDTQIAPSFSAGGVIKYANCTRHEFIDELPLREEFGTPGLLQFYRSALAYQLRDECGLDF
IHKKENNLLRVLMHGLKDLPAINIYGNLTASRVGVVAFNIGGISPYDLARVLSYEYAIETRAGCSCAGPYGHDLLNLNAQ
KSSDFNAKPGWIRVSLHFTHSINDIDYLLDSLKKAVKKLR

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=306, Percent_Identity=28.7581699346405, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1789175, Length=419, Percent_Identity=22.1957040572792, Blast_Score=72, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193211090, Length=451, Percent_Identity=24.6119733924612, Blast_Score=134, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 48483; Mature: 48483

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAFLNRSFAPLLNPNESPLEQVRSSIILKKGVSYFDWGASGLASALVEKRVKSLLPYYA
CCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHC
NAHSVASKHAILMGMLLKECQEKLKRSLNLSDDHCVLSAGYGASSAIKKFQEILGVCIPS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
KTKKNLEPYLKDMALKRVIVGPYEHHSNEISWREGLCEVVRIPLNEHGLLDLEILEQTLK
CCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHH
KSPNSLVSMSAASNVTGLLTPLKEVSSLCEKYKAALALDLANFSVHANPKDCKYQTGFYA
CCCCHHEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
PHKLLGGIGGCGLLGISKDLIDTQIAPSFSAGGVIKYANCTRHEFIDELPLREEFGTPGL
HHHHHCCCCCCHHHHCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHCCCHHHCCCCHH
LQFYRSALAYQLRDECGLDFIHKKENNLLRVLMHGLKDLPAINIYGNLTASRVGVVAFNI
HHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCEEEEECCCHHHHEEEEEEEC
GGISPYDLARVLSYEYAIETRAGCSCAGPYGHDLLNLNAQKSSDFNAKPGWIRVSLHFTH
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEEC
SINDIDYLLDSLKKAVKKLR
CCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQAFLNRSFAPLLNPNESPLEQVRSSIILKKGVSYFDWGASGLASALVEKRVKSLLPYYA
CCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHC
NAHSVASKHAILMGMLLKECQEKLKRSLNLSDDHCVLSAGYGASSAIKKFQEILGVCIPS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
KTKKNLEPYLKDMALKRVIVGPYEHHSNEISWREGLCEVVRIPLNEHGLLDLEILEQTLK
CCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHH
KSPNSLVSMSAASNVTGLLTPLKEVSSLCEKYKAALALDLANFSVHANPKDCKYQTGFYA
CCCCHHEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
PHKLLGGIGGCGLLGISKDLIDTQIAPSFSAGGVIKYANCTRHEFIDELPLREEFGTPGL
HHHHHCCCCCCHHHHCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHCCCHHHCCCCHH
LQFYRSALAYQLRDECGLDFIHKKENNLLRVLMHGLKDLPAINIYGNLTASRVGVVAFNI
HHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCEEEEECCCHHHHEEEEEEEC
GGISPYDLARVLSYEYAIETRAGCSCAGPYGHDLLNLNAQKSSDFNAKPGWIRVSLHFTH
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEEC
SINDIDYLLDSLKKAVKKLR
CCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]