Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is 188527812

Identifier: 188527812

GI number: 188527812

Start: 1036552

End: 1038303

Strand: Direct

Name: 188527812

Synonym: HPSH_05260

Alternate gene names: NA

Gene position: 1036552-1038303 (Clockwise)

Preceding gene: 188527798

Following gene: 188527813

Centisome position: 64.44

GC content: 36.13

Gene sequence:

>1752_bases
ATGGCAGACGCAAACATAAAAACGGAGTTAAAAAAACTCCATCAAATTTTAGTGGATAGTGAATATTTTTACCAAGTTCC
CGATTACCAACGCCCTTATATGTGGGATAAAGATCATTTAGGGGCTTTGATTGATGATTTGGTGGGCAGCTACACAAACA
ATAAAGAAGATGAGTATTTTTGCGGCTCTATTGTGATCGCCAAAAACCAAAAAGATAACAGATGGGATGTTGTGGATGGC
CAACAGCGATTAACGAGTTTTATCATTCTGGCTTGCACGATTTTAAGGCTTTATAAACATAGTCTTGGGAAAAAATCTGA
AGATTTTATTAAAGAGAGTATTTATGACAGACACGATGAAGAAAAAGAGCGTCTGAAGTTCTTAACCGCTCAAAATTACA
ATAATATTTTTGAAAACACGGTGTTAAACAATTTGGAGTTTGAAGACAACCTTAAAAAGAGCGAGTTGAATAAGAAATTT
GAAGAAAACACTTATTTGCGTAACGCTTATTATTTCAAGGAGCTATTGAATGAGAGCGTGAAAAATGGTTCAATAAGCGA
TATTGATGATTTTGTCAAGTGGTTTTATGAACACATTGTTTTGATCAGGGTCATTTGTTTTGAGCAAGACAGTGCGATGC
AAATCTTTCAAGTGTTAAACGACAGAGGCCAACCCTTAAGCCCTATTGATATTTTAAAATCCAATTTAATGCAAGAAATC
AAACAAGATAGTGAAAAGCGTAAGGATTTTATAACCACTTGGGACAAATTGGTTGAAGCTTGCAAGAGCGTTGAGGGCGT
GGATATCGATTTGGAAGACTTTTTTAACATGTATTTAGAATACGCTGATCCTATCAATTCTAAAAAGAGAGCCGATAAGG
GATTAAAAAAGGTGTTCAAAGACAGCAAAAAAGACGCTTGCGAGTTTATTTATGGCGTGAGCGCTTTTATGAAATCTTAT
ACCGATTTGTTAAAAAAACAAGACCGATACATCTACTTATTGAGGTATCTCCCCTCTAGGTATTGGGCCAGTATTTTAAC
GACAGCCCTTTATGTCAAATACCCTGATTTTGACGCTTTGAAAAAGCTTTTGGTATCTTATTATTACCAAACTTGGATTG
CAGGAGGCACGATCACGCGCATCAAGCAAACGAGTATCAACATTATCAAAAATGTTAAAAGCAATAAGGGCATTAAAACC
ATCCAAGAGCTTATATTGGATAACATAGACTCTTATAACACCTTTGACCAATACCGCTATAACTTATGGAAAAACTCTTC
TGTTTATCCTAGCCAATGGGTGTGCCCTGTCTTAGCCCTAGCTAATTATTTCATGGTGGATGAAGAGAAACCCCATTTTA
TCGTTATGGATGCAAAAACCCAAGTGGAGCATGTTTTGCCCCAAAAACCCCAAAGAGATAGTCAATGGAATGCGGATTTT
GACAAAGAAAAAAAAGAAGAATGGGTGAATAATATCGCGAATTTAACCCTTTTAAAGCGTAAAAAGAACGCGCAAGCTTT
AAACGGGGATTTTGATGAAAAAAGAAAAATTTATGGCGGCAAAGACACGAGCAAAGTGATTAGCTGTTATGACATCACTA
AAGAATTGTATAGAGATTATAAGAAGTGGGACGAGAAGTCTCTCCAAAAGCGATACGACTTTTTGTATGGAATTATCACG
CCCATTTTACACATAGAAGGGCAAGAAGAAGAATTTGAAGAGGAACTTGAAGAAGAAATTGATCTAGAATGA

Upstream 100 bases:

>100_bases
TAAATTAAATAAAGTCTTAAATTAAATAAAGCTTTAAATTAAATAAAGTCTTAAATTCAATCAGTGGGGCTTACAGAGTT
AAATTTTTAAAGGAGAGATG

Downstream 100 bases:

>100_bases
TTAAAGATTGCTAAGCATCAAAACAACAAAGGAGTGATCAATGCCTAAAAAAGAGCTATTAAAGATGTCAAAGAAAAGGA
TTTTTAAAGACTTCTTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYFCGSIVIAKNQKDNRWDVVDG
QQRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDEEKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKF
EENTYLRNAYYFKELLNESVKNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEI
KQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFKDSKKDACEFIYGVSAFMKSY
TDLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDALKKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKT
IQELILDNIDSYNTFDQYRYNLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADF
DKEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDYKKWDEKSLQKRYDFLYGIIT
PILHIEGQEEEFEEELEEEIDLE

Sequences:

>Translated_583_residues
MADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYFCGSIVIAKNQKDNRWDVVDG
QQRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDEEKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKF
EENTYLRNAYYFKELLNESVKNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEI
KQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFKDSKKDACEFIYGVSAFMKSY
TDLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDALKKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKT
IQELILDNIDSYNTFDQYRYNLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADF
DKEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDYKKWDEKSLQKRYDFLYGIIT
PILHIEGQEEEFEEELEEEIDLE
>Mature_582_residues
ADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYFCGSIVIAKNQKDNRWDVVDGQ
QRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDEEKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKFE
ENTYLRNAYYFKELLNESVKNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEIK
QDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFKDSKKDACEFIYGVSAFMKSYT
DLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDALKKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKTI
QELILDNIDSYNTFDQYRYNLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADFD
KEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDYKKWDEKSLQKRYDFLYGIITP
ILHIEGQEEEFEEELEEEIDLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69191; Mature: 69060

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYF
CCCCHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE
CGSIVIAKNQKDNRWDVVDGQQRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDE
ECEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
EKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKFEENTYLRNAYYFKELLNESV
HHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEI
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
KQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DSKKDACEFIYGVSAFMKSYTDLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDAL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKTIQELILDNIDSYNTFDQYRY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHH
NLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADF
HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCC
DKEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDY
CHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
KKWDEKSLQKRYDFLYGIITPILHIEGQEEEFEEELEEEIDLE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYF
CCCHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE
CGSIVIAKNQKDNRWDVVDGQQRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDE
ECEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
EKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKFEENTYLRNAYYFKELLNESV
HHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEI
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
KQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DSKKDACEFIYGVSAFMKSYTDLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDAL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKTIQELILDNIDSYNTFDQYRY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHH
NLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADF
HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCC
DKEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDY
CHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
KKWDEKSLQKRYDFLYGIITPILHIEGQEEEFEEELEEEIDLE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA