| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527812
Identifier: 188527812
GI number: 188527812
Start: 1036552
End: 1038303
Strand: Direct
Name: 188527812
Synonym: HPSH_05260
Alternate gene names: NA
Gene position: 1036552-1038303 (Clockwise)
Preceding gene: 188527798
Following gene: 188527813
Centisome position: 64.44
GC content: 36.13
Gene sequence:
>1752_bases ATGGCAGACGCAAACATAAAAACGGAGTTAAAAAAACTCCATCAAATTTTAGTGGATAGTGAATATTTTTACCAAGTTCC CGATTACCAACGCCCTTATATGTGGGATAAAGATCATTTAGGGGCTTTGATTGATGATTTGGTGGGCAGCTACACAAACA ATAAAGAAGATGAGTATTTTTGCGGCTCTATTGTGATCGCCAAAAACCAAAAAGATAACAGATGGGATGTTGTGGATGGC CAACAGCGATTAACGAGTTTTATCATTCTGGCTTGCACGATTTTAAGGCTTTATAAACATAGTCTTGGGAAAAAATCTGA AGATTTTATTAAAGAGAGTATTTATGACAGACACGATGAAGAAAAAGAGCGTCTGAAGTTCTTAACCGCTCAAAATTACA ATAATATTTTTGAAAACACGGTGTTAAACAATTTGGAGTTTGAAGACAACCTTAAAAAGAGCGAGTTGAATAAGAAATTT GAAGAAAACACTTATTTGCGTAACGCTTATTATTTCAAGGAGCTATTGAATGAGAGCGTGAAAAATGGTTCAATAAGCGA TATTGATGATTTTGTCAAGTGGTTTTATGAACACATTGTTTTGATCAGGGTCATTTGTTTTGAGCAAGACAGTGCGATGC AAATCTTTCAAGTGTTAAACGACAGAGGCCAACCCTTAAGCCCTATTGATATTTTAAAATCCAATTTAATGCAAGAAATC AAACAAGATAGTGAAAAGCGTAAGGATTTTATAACCACTTGGGACAAATTGGTTGAAGCTTGCAAGAGCGTTGAGGGCGT GGATATCGATTTGGAAGACTTTTTTAACATGTATTTAGAATACGCTGATCCTATCAATTCTAAAAAGAGAGCCGATAAGG GATTAAAAAAGGTGTTCAAAGACAGCAAAAAAGACGCTTGCGAGTTTATTTATGGCGTGAGCGCTTTTATGAAATCTTAT ACCGATTTGTTAAAAAAACAAGACCGATACATCTACTTATTGAGGTATCTCCCCTCTAGGTATTGGGCCAGTATTTTAAC GACAGCCCTTTATGTCAAATACCCTGATTTTGACGCTTTGAAAAAGCTTTTGGTATCTTATTATTACCAAACTTGGATTG CAGGAGGCACGATCACGCGCATCAAGCAAACGAGTATCAACATTATCAAAAATGTTAAAAGCAATAAGGGCATTAAAACC ATCCAAGAGCTTATATTGGATAACATAGACTCTTATAACACCTTTGACCAATACCGCTATAACTTATGGAAAAACTCTTC TGTTTATCCTAGCCAATGGGTGTGCCCTGTCTTAGCCCTAGCTAATTATTTCATGGTGGATGAAGAGAAACCCCATTTTA TCGTTATGGATGCAAAAACCCAAGTGGAGCATGTTTTGCCCCAAAAACCCCAAAGAGATAGTCAATGGAATGCGGATTTT GACAAAGAAAAAAAAGAAGAATGGGTGAATAATATCGCGAATTTAACCCTTTTAAAGCGTAAAAAGAACGCGCAAGCTTT AAACGGGGATTTTGATGAAAAAAGAAAAATTTATGGCGGCAAAGACACGAGCAAAGTGATTAGCTGTTATGACATCACTA AAGAATTGTATAGAGATTATAAGAAGTGGGACGAGAAGTCTCTCCAAAAGCGATACGACTTTTTGTATGGAATTATCACG CCCATTTTACACATAGAAGGGCAAGAAGAAGAATTTGAAGAGGAACTTGAAGAAGAAATTGATCTAGAATGA
Upstream 100 bases:
>100_bases TAAATTAAATAAAGTCTTAAATTAAATAAAGCTTTAAATTAAATAAAGTCTTAAATTCAATCAGTGGGGCTTACAGAGTT AAATTTTTAAAGGAGAGATG
Downstream 100 bases:
>100_bases TTAAAGATTGCTAAGCATCAAAACAACAAAGGAGTGATCAATGCCTAAAAAAGAGCTATTAAAGATGTCAAAGAAAAGGA TTTTTAAAGACTTCTTAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 583; Mature: 582
Protein sequence:
>583_residues MADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYFCGSIVIAKNQKDNRWDVVDG QQRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDEEKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKF EENTYLRNAYYFKELLNESVKNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEI KQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFKDSKKDACEFIYGVSAFMKSY TDLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDALKKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKT IQELILDNIDSYNTFDQYRYNLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADF DKEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDYKKWDEKSLQKRYDFLYGIIT PILHIEGQEEEFEEELEEEIDLE
Sequences:
>Translated_583_residues MADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYFCGSIVIAKNQKDNRWDVVDG QQRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDEEKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKF EENTYLRNAYYFKELLNESVKNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEI KQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFKDSKKDACEFIYGVSAFMKSY TDLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDALKKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKT IQELILDNIDSYNTFDQYRYNLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADF DKEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDYKKWDEKSLQKRYDFLYGIIT PILHIEGQEEEFEEELEEEIDLE >Mature_582_residues ADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYFCGSIVIAKNQKDNRWDVVDGQ QRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDEEKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKFE ENTYLRNAYYFKELLNESVKNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEIK QDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFKDSKKDACEFIYGVSAFMKSYT DLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDALKKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKTI QELILDNIDSYNTFDQYRYNLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADFD KEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDYKKWDEKSLQKRYDFLYGIITP ILHIEGQEEEFEEELEEEIDLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69191; Mature: 69060
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYF CCCCHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE CGSIVIAKNQKDNRWDVVDGQQRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDE ECEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC EKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKFEENTYLRNAYYFKELLNESV HHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEI CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH KQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFK HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH DSKKDACEFIYGVSAFMKSYTDLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDAL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHH KKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKTIQELILDNIDSYNTFDQYRY HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHH NLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADF HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCC DKEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDY CHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH KKWDEKSLQKRYDFLYGIITPILHIEGQEEEFEEELEEEIDLE HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure ADANIKTELKKLHQILVDSEYFYQVPDYQRPYMWDKDHLGALIDDLVGSYTNNKEDEYF CCCHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE CGSIVIAKNQKDNRWDVVDGQQRLTSFIILACTILRLYKHSLGKKSEDFIKESIYDRHDE ECEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC EKERLKFLTAQNYNNIFENTVLNNLEFEDNLKKSELNKKFEENTYLRNAYYFKELLNESV HHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNGSISDIDDFVKWFYEHIVLIRVICFEQDSAMQIFQVLNDRGQPLSPIDILKSNLMQEI CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH KQDSEKRKDFITTWDKLVEACKSVEGVDIDLEDFFNMYLEYADPINSKKRADKGLKKVFK HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH DSKKDACEFIYGVSAFMKSYTDLLKKQDRYIYLLRYLPSRYWASILTTALYVKYPDFDAL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHH KKLLVSYYYQTWIAGGTITRIKQTSINIIKNVKSNKGIKTIQELILDNIDSYNTFDQYRY HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHH NLWKNSSVYPSQWVCPVLALANYFMVDEEKPHFIVMDAKTQVEHVLPQKPQRDSQWNADF HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCC DKEKKEEWVNNIANLTLLKRKKNAQALNGDFDEKRKIYGGKDTSKVISCYDITKELYRDY CHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH KKWDEKSLQKRYDFLYGIITPILHIEGQEEEFEEELEEEIDLE HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA