| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527792
Identifier: 188527792
GI number: 188527792
Start: 1016195
End: 1017262
Strand: Direct
Name: 188527792
Synonym: HPSH_05140
Alternate gene names: NA
Gene position: 1016195-1017262 (Clockwise)
Preceding gene: 188527774
Following gene: 188527793
Centisome position: 63.17
GC content: 40.26
Gene sequence:
>1068_bases TTGAAACATTTAACCCCACTCACTCACACCATCTTTAAAGCCTTATTGCTAGGCACAGCCTTGAGTGCATCTTTAAGCTT AGCCGCAGCAGAAAGCCCCGCTAAAACAGAGCCTAAATCCGCTAAAGGGGTTAAAAACAAGCCCAAATCGCCCGTTACTA AAGTCATGATGACCAATTGCGATAGTATTAAAGACTTTAACGCTAAGCAAAAAGAAGTTTTAAAAGCCGCTTATCAATTC GGCTCTAAAGAAAATTTAGGCTATGAAATGGCAGGTATTGCATGGAAAGAGTCATGCGCAGGGGTTTATAAAATCAATTT TTCGGATCCGAGTGCGGGCGTGTATCATTCCTATATCCCAAGCGTTCTAAAAAGCTATGGGCATAATGATAGCCCCTTTT TGCGTAATGTGATGGGGGAATTGCTCATTAAAGACGATGCGTTTGCTTCTGAAGTGGCTTTAAAAGAGTTGCTCTATTGG AAAACACGCTACCATGACAATCTAAAAGACATGATTAAATCTTACAACAAGGGCAGTCGTTGGGAAAGGAGTGAAAAGTC TAACGCTGAAGCTGAAAAATATTACGAAGAGATACAAGACAGAATCAGGCGTTTGAAAGAATCTAAAATCTTTGATTCGC AGTCTAGTAATGACCAAGAATTGCAAAAAAGCGCTAATAGCAACTTGGATTTAGATCCTATCGGCAACGCCATGCCCCAA ACTTTAGCTAAAACAGAGACTAAAGAAACTCAAACAGAAGAAACCCAAGCAGAAAAATCCCAAGAAATGAAAGAGGCAAC TAGCGAGCAAACAACCAGTAAGCCAGAAAAAGCAAAAGATAAACCCATGTATTTGGCTCAAATCAACAGCACTGATTTCA CACCCGCTAAAAAAAGCCCTCAAAAACCGGCTAAAGTGAGTCAAAAACGCTCCCCCAAAAACAATAAAAATAATATTAAA AGCAGCACCAAAACCGCTTCCAAAAAACAAGAAGTGTGCAAAAATTGCTCTCCAGGGCAAAGGAATGCGATTTTAGCTAA CCGCATCACCCTCATGCAAGAGCTTTAA
Upstream 100 bases:
>100_bases TCCCTAAAAAACAAAATCACTTTTAAGACTAAATCATGTTAGAATTATACTTGAATTTATTCTTAGTTCAGTTTATTTCT CAATACAAAAGGTAGGCGTT
Downstream 100 bases:
>100_bases AAAGTCCTAAAAATGGCGCAAAAAACTCTTTTGATCATCACTGATGGCATCGGGTATCGTAAAGATAGCGACTATAACGC ATTCTTTCATGCTAAAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNCDSIKDFNAKQKEVLKAAYQF GSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIPSVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYW KTRYHDNLKDMIKSYNKGSRWERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSPQKPAKVSQKRSPKNNKNNIK SSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL
Sequences:
>Translated_355_residues MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNCDSIKDFNAKQKEVLKAAYQF GSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIPSVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYW KTRYHDNLKDMIKSYNKGSRWERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSPQKPAKVSQKRSPKNNKNNIK SSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL >Mature_355_residues MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNCDSIKDFNAKQKEVLKAAYQF GSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIPSVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYW KTRYHDNLKDMIKSYNKGSRWERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSPQKPAKVSQKRSPKNNKNNIK SSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39766; Mature: 39766
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNC CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC DSIKDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIP HHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHCCEEEEEECCCCCCCHHHHHHH SVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSR HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC WERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCC QKPAKVSQKRSPKNNKNNIKSSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNC CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC DSIKDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIP HHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHCCEEEEEECCCCCCCHHHHHHH SVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSR HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC WERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCC QKPAKVSQKRSPKNNKNNIKSSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA