| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is gpmI [H]
Identifier: 188527793
GI number: 188527793
Start: 1017275
End: 1018750
Strand: Direct
Name: gpmI [H]
Synonym: HPSH_05145
Alternate gene names: 188527793
Gene position: 1017275-1018750 (Clockwise)
Preceding gene: 188527792
Following gene: 188527794
Centisome position: 63.24
GC content: 41.46
Gene sequence:
>1476_bases ATGGCGCAAAAAACTCTTTTGATCATCACTGATGGCATCGGGTATCGTAAAGATAGCGACTATAACGCATTCTTTCATGC TAAAAAACCCACTTATGACTTGATGTTTAAAACCTTGCCTTACAGCCTAATTGATACGCATGGCTTGAGCGTGGGCTTAC CTAATGGGCAAATGGGAAATTCTGAAGTGGGGCATATGTGTATTGGGGCTGGTAGGGTGCTGTATCAAGATTTAGTTAAA ATTTCTTTAAGCCTTCAAAACGATGGCTTAAAAAACAACCCCGCTTTTTTAAACACGATCCACAAAAGCAAAGTGGTGCA TCTTATGGGTTTAATGAGCGATGGAGGCGTGCATTCACACATTGAGCATTTTATCGCTTTGGCTTTAGAGTGTGAAAAAT CCCATAAAAAAGTCTGTCTGCATTTAATCACCGATGGGCGCGATGTCGCTCCTAAAAGCGCTTTAACTTATTTAAAACAA ATGCAAAATATCTGCAATGAAAACATTCAAATCGCTACCATAAGCGGTCGTTTTTATGCCATGGATAGGGATAAGCGCTT TGAAAGGATTAAGCTTGCGTATCATAGCTTAATGGGGCTTAATCACACGCCTTTAAGCCCTAGCGAGTATATCCAAAGCC AGTATGATAAAAATACCACCGATGAATTTATCATGCCCGCTTGTTTTAAAGATTATTGCGGCATGCAAGATGGTGAAAGC TTCATTTTTATCAATTTTAGGAATGATAGGGCTAGAGAAATCGTGAGTGCTTTAGGCCAAAAGGAATTCAATGGCTTTAA GCGCGAAACTTTTAAAAAACTCCATATCGCTACCATGACGCCTTATGATAACACTTTCCCCTACCCTGTTTTATTCCCCA AAGAAAGCGTTCAAAACACGCTCGCTGAAGTGGTCTCTCAACACAACCTGACCCAAAGCCATATCGCTGAAACTGAAAAA TACGCGCATGTAACCTTTTTCATCAATGGCGGAGTGGAAGCGCCTTTTAAAAATGAAAACCGGGTGCTTATCCAAAGCCC AAAAGTAACCACTTATGATTTAAAGCCTGAAATGAGCGCTAAAGAAGTAACCCTTGCGGTGTTAGATCAGATGGAATTAG GCACGGATTTGATCATTGTGAATTTTGCTAATGGCGATATGGTGGGGCATACGGGGAATTTTGAAGCGAGCATCAAAGCG GTAGAAGAAGTGGATGCATGCTTAGGGGAAATCCTTTCACTGGCTAAAAAATTGGATTACGCCATGCTTTTAACCAGCGA TCATGGGAATTGCGAACGCATGAAAGATGAAAATCAAAACCCCTTAACCAACCACACCGCCGGGAGCGTGTATTGTTTTG TTTTAGGGAATGGAGTTAGATCCATTAAAAACGGAGCGCTAAACAATATCGCTAGCAGCGTGTTAAAACTCATGGGCCTT AAAGCCCCAGCAACGATGGACGAACCCCTATTTTAA
Upstream 100 bases:
>100_bases CAAAAAACAAGAAGTGTGCAAAAATTGCTCTCCAGGGCAAAGGAATGCGATTTTAGCTAACCGCATCACCCTCATGCAAG AGCTTTAAAAAGTCCTAAAA
Downstream 100 bases:
>100_bases ACTAAAGGAAGAGAATGCAAATTGATGACGCATTATTGCAACGCTTGGAAAAATTGAGCATGCTAGAGATTAAAGATGAG CATAAAGAGAGCGTTAAAGG
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM [H]
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MAQKTLLIITDGIGYRKDSDYNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPNGQMGNSEVGHMCIGAGRVLYQDLVK ISLSLQNDGLKNNPAFLNTIHKSKVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQ MQNICNENIQIATISGRFYAMDRDKRFERIKLAYHSLMGLNHTPLSPSEYIQSQYDKNTTDEFIMPACFKDYCGMQDGES FIFINFRNDRAREIVSALGQKEFNGFKRETFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEK YAHVTFFINGGVEAPFKNENRVLIQSPKVTTYDLKPEMSAKEVTLAVLDQMELGTDLIIVNFANGDMVGHTGNFEASIKA VEEVDACLGEILSLAKKLDYAMLLTSDHGNCERMKDENQNPLTNHTAGSVYCFVLGNGVRSIKNGALNNIASSVLKLMGL KAPATMDEPLF
Sequences:
>Translated_491_residues MAQKTLLIITDGIGYRKDSDYNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPNGQMGNSEVGHMCIGAGRVLYQDLVK ISLSLQNDGLKNNPAFLNTIHKSKVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQ MQNICNENIQIATISGRFYAMDRDKRFERIKLAYHSLMGLNHTPLSPSEYIQSQYDKNTTDEFIMPACFKDYCGMQDGES FIFINFRNDRAREIVSALGQKEFNGFKRETFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEK YAHVTFFINGGVEAPFKNENRVLIQSPKVTTYDLKPEMSAKEVTLAVLDQMELGTDLIIVNFANGDMVGHTGNFEASIKA VEEVDACLGEILSLAKKLDYAMLLTSDHGNCERMKDENQNPLTNHTAGSVYCFVLGNGVRSIKNGALNNIASSVLKLMGL KAPATMDEPLF >Mature_490_residues AQKTLLIITDGIGYRKDSDYNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPNGQMGNSEVGHMCIGAGRVLYQDLVKI SLSLQNDGLKNNPAFLNTIHKSKVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQM QNICNENIQIATISGRFYAMDRDKRFERIKLAYHSLMGLNHTPLSPSEYIQSQYDKNTTDEFIMPACFKDYCGMQDGESF IFINFRNDRAREIVSALGQKEFNGFKRETFKKLHIATMTPYDNTFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEKY AHVTFFINGGVEAPFKNENRVLIQSPKVTTYDLKPEMSAKEVTLAVLDQMELGTDLIIVNFANGDMVGHTGNFEASIKAV EEVDACLGEILSLAKKLDYAMLLTSDHGNCERMKDENQNPLTNHTAGSVYCFVLGNGVRSIKNGALNNIASSVLKLMGLK APATMDEPLF
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0696
COG function: function code G; Phosphoglyceromutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BPG-independent phosphoglycerate mutase family [H]
Homologues:
Organism=Escherichia coli, GI1790041, Length=504, Percent_Identity=41.8650793650794, Blast_Score=405, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17507741, Length=505, Percent_Identity=41.3861386138614, Blast_Score=378, Evalue=1e-105, Organism=Caenorhabditis elegans, GI32564249, Length=505, Percent_Identity=41.3861386138614, Blast_Score=377, Evalue=1e-105,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR011258 - InterPro: IPR006124 - InterPro: IPR005995 [H]
Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 54813; Mature: 54681
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQKTLLIITDGIGYRKDSDYNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPNGQMGN CCCCEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHCCHHHHHCCCCEEECCCCCCCC SEVGHMCIGAGRVLYQDLVKISLSLQNDGLKNNPAFLNTIHKSKVVHLMGLMSDGGVHSH CCCCCEEECCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH IEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNENIQIATISGRFYA HHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEE MDRDKRFERIKLAYHSLMGLNHTPLSPSEYIQSQYDKNTTDEFIMPACFKDYCGMQDGES ECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCE FIFINFRNDRAREIVSALGQKEFNGFKRETFKKLHIATMTPYDNTFPYPVLFPKESVQNT EEEEEECCHHHHHHHHHHCHHHHCCHHHHHHHEEEEEEECCCCCCCCCCEECCHHHHHHH LAEVVSQHNLTQSHIAETEKYAHVTFFINGGVEAPFKNENRVLIQSPKVTTYDLKPEMSA HHHHHHHCCCCHHHHHHHHCEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCH KEVTLAVLDQMELGTDLIIVNFANGDMVGHTGNFEASIKAVEEVDACLGEILSLAKKLDY HHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE AMLLTSDHGNCERMKDENQNPLTNHTAGSVYCFVLGNGVRSIKNGALNNIASSVLKLMGL EEEEECCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC KAPATMDEPLF CCCCCCCCCCC >Mature Secondary Structure AQKTLLIITDGIGYRKDSDYNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPNGQMGN CCCEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHCCHHHHHCCCCEEECCCCCCCC SEVGHMCIGAGRVLYQDLVKISLSLQNDGLKNNPAFLNTIHKSKVVHLMGLMSDGGVHSH CCCCCEEECCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH IEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNENIQIATISGRFYA HHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEE MDRDKRFERIKLAYHSLMGLNHTPLSPSEYIQSQYDKNTTDEFIMPACFKDYCGMQDGES ECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCE FIFINFRNDRAREIVSALGQKEFNGFKRETFKKLHIATMTPYDNTFPYPVLFPKESVQNT EEEEEECCHHHHHHHHHHCHHHHCCHHHHHHHEEEEEEECCCCCCCCCCEECCHHHHHHH LAEVVSQHNLTQSHIAETEKYAHVTFFINGGVEAPFKNENRVLIQSPKVTTYDLKPEMSA HHHHHHHCCCCHHHHHHHHCEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCH KEVTLAVLDQMELGTDLIIVNFANGDMVGHTGNFEASIKAVEEVDACLGEILSLAKKLDY HHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE AMLLTSDHGNCERMKDENQNPLTNHTAGSVYCFVLGNGVRSIKNGALNNIASSVLKLMGL EEEEECCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC KAPATMDEPLF CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA