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The map label for this gene is ygaD [C]

Identifier: 188527774

GI number: 188527774

Start: 994277

End: 994933

Strand: Direct

Name: ygaD [C]

Synonym: HPSH_05015

Alternate gene names: 188527774

Gene position: 994277-994933 (Clockwise)

Preceding gene: 188527773

Following gene: 188527792

Centisome position: 61.81

GC content: 38.36

Gene sequence:

>657_bases
ATGAAATTTAAATTTTTGAATATAGATAATGAGAGCGGTTTTATTTTGATTGAAAAAGAATTGAAACGATTAAACATTCT
CGCTCAAGTCAAAGAAGATTGCATTGAATTAAAAGGCGATAATATCAAACAAGCAAGAATCTATCTTAAAACGCTTTTTA
GCTCCAATATTGTGGAATTAGACGACCATCAAAAAAGCGCAAACGCTTTAATAGAGCGCTTGAAATCTTTAGGTTTAAAA
ATTGCGGTGGCTGAAAGCTGCTCTGGGGGGTTATTATCGCATGCATTCACTTCCATTAGCGGGGCTTCAGCGGTTTTTAT
GGGGGGTGTTGTGTGTTACAATGAAGAGGTTAAGCGCGAATTATTGAAAGTCAATGCCACGACTTTAAAAGTCTTTGGGG
TTTATAGCGAAGAATGCGTGAAAGAAATGCTATTAGGCGTGTTTTTGAATTTTAAAGTGGATTTAGCGCTTGCGATAAGT
GGGGTGGCTGGCCCTAATGGGGGGAGCAAGGCTAATCCTGTAGGCACGATTTATATTGGTGCGCAAAAATTAGGATCTCA
AGCTTTAATTGATCGCTGTTTTTTTGAAGGGAACAGAGAAAGCATCCAAAATAAAAGCGTAGAGCATGCCCTAAACATGC
TCGCTAGAATGCTATAA

Upstream 100 bases:

>100_bases
ATCCAAGCTTTTTTTCGCACTCAAAGCACGATTGATTTAGAAATAGAAGAAGTGGAAGAATTATGGCGTACGCTGAATTT
AGGGTTTTGAAAGGTTAAAA

Downstream 100 bases:

>100_bases
AACTACCTTAACGCGCAAACGCTACCAAGCTCTTTTTGAACCACTTTAGCGATGTAAGCAATTTCATTATCGTTAAGGTT
TTCAACGCTCGCTTTTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKFKFLNIDNESGFILIEKELKRLNILAQVKEDCIELKGDNIKQARIYLKTLFSSNIVELDDHQKSANALIERLKSLGLK
IAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRELLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDLALAIS
GVAGPNGGSKANPVGTIYIGAQKLGSQALIDRCFFEGNRESIQNKSVEHALNMLARML

Sequences:

>Translated_218_residues
MKFKFLNIDNESGFILIEKELKRLNILAQVKEDCIELKGDNIKQARIYLKTLFSSNIVELDDHQKSANALIERLKSLGLK
IAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRELLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDLALAIS
GVAGPNGGSKANPVGTIYIGAQKLGSQALIDRCFFEGNRESIQNKSVEHALNMLARML
>Mature_218_residues
MKFKFLNIDNESGFILIEKELKRLNILAQVKEDCIELKGDNIKQARIYLKTLFSSNIVELDDHQKSANALIERLKSLGLK
IAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRELLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDLALAIS
GVAGPNGGSKANPVGTIYIGAQKLGSQALIDRCFFEGNRESIQNKSVEHALNMLARML

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=141, Percent_Identity=36.8794326241135, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1787818, Length=147, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR020817
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 23820; Mature: 23820

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKFLNIDNESGFILIEKELKRLNILAQVKEDCIELKGDNIKQARIYLKTLFSSNIVEL
CEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEC
DDHQKSANALIERLKSLGLKIAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRE
CCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHCCEEEECHHHHHH
LLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDLALAISGVAGPNGGSKANPVGTIYIG
HHHHCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCEEEEEC
AQKLGSQALIDRCFFEGNRESIQNKSVEHALNMLARML
HHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKFKFLNIDNESGFILIEKELKRLNILAQVKEDCIELKGDNIKQARIYLKTLFSSNIVEL
CEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEC
DDHQKSANALIERLKSLGLKIAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRE
CCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHCCEEEECHHHHHH
LLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDLALAISGVAGPNGGSKANPVGTIYIG
HHHHCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCEEEEEC
AQKLGSQALIDRCFFEGNRESIQNKSVEHALNMLARML
HHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA